STRINGSTRING
Rpic_1057 Rpic_1057 Rpic_2917 Rpic_2917 Rpic_2918 Rpic_2918 Rpic_3070 Rpic_3070 Rpic_3071 Rpic_3071 Rpic_3072 Rpic_3072 Rpic_3249 Rpic_3249 Rpic_3250 Rpic_3250 Rpic_3251 Rpic_3251 Rpic_3252 Rpic_3252 Rpic_3253 Rpic_3253 Rpic_3680 Rpic_3680
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Rpic_1057KEGG: rso:RSc1213 putative type 4 fimbrial biogenesis protein; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein. (265 aa)
Rpic_2917TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: rso:RSc2681 putative twitching mobility protein transport fimbria. (379 aa)
Rpic_2918Twitching motility protein; KEGG: rso:RSc2682 probable twitching mobility protein transport fimbria; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase. (347 aa)
Rpic_3070TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: rso:RSc2825 probable type IV pilus assembly protein. (575 aa)
Rpic_3071PFAM: type II secretion system protein; KEGG: rso:RSc2826 probable fimbrial assembly transmembrane protein. (424 aa)
Rpic_3072Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (293 aa)
Rpic_3249TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: rso:RSc2971 probable fimbrial type-4 assembly signal peptide protein. (721 aa)
Rpic_3250PFAM: Pilus assembly protein PilP; KEGG: rso:RSc2972 probable fimbrial type-4 assembly lipoprotein. (181 aa)
Rpic_3251PFAM: Pilus assembly protein PilO; KEGG: rso:RSc2973 probable fimbrial type-4 assembly membrane transmembrane protein. (219 aa)
Rpic_3252PFAM: Fimbrial assembly family protein; KEGG: rso:RSc2974 probable fimbrial type-4 assembly membrane transmembrane protein. (210 aa)
Rpic_3253TIGRFAM: type IV pilus assembly protein PilM; KEGG: rso:RSc2975 probable fimbrial type-4 assembly protein. (361 aa)
Rpic_3680PFAM: Peptidoglycan-binding LysM; KEGG: rso:RSc0069 probable signal peptide protein. (395 aa)
Your Current Organism:
Ralstonia pickettii 12J
NCBI taxonomy Id: 402626
Other names: R. pickettii 12J, Ralstonia pickettii str. 12J, Ralstonia pickettii strain 12J
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