STRINGSTRING
Rpic_0573 Rpic_0573 kynA kynA Rpic_0720 Rpic_0720 Rpic_0865 Rpic_0865 Rpic_0866 Rpic_0866 Rpic_1104 Rpic_1104 Rpic_1105 Rpic_1105 Rpic_2756 Rpic_2756 Rpic_1641 Rpic_1641 Rpic_1698 Rpic_1698 Rpic_1791 Rpic_1791 Rpic_1817 Rpic_1817 Rpic_1855 Rpic_1855 Rpic_1876 Rpic_1876 Rpic_2689 Rpic_2689 Rpic_2536 Rpic_2536 Rpic_2493 Rpic_2493 Rpic_2485 Rpic_2485 Rpic_2255 Rpic_2255 Rpic_2241 Rpic_2241 Rpic_2150 Rpic_2150 Rpic_2114 Rpic_2114 Rpic_1889 Rpic_1889 Rpic_3454 Rpic_3454 Rpic_0139 Rpic_0139 Rpic_0218 Rpic_0218 Rpic_0219 Rpic_0219 Rpic_0288 Rpic_0288 Rpic_0572 Rpic_0572 Rpic_3264 Rpic_3264 Rpic_3263 Rpic_3263 msrQ msrQ Rpic_1107 Rpic_1107 Rpic_3204 Rpic_3204 Rpic_3162 Rpic_3162 apaG apaG Rpic_3055 Rpic_3055 katG katG Rpic_2852 Rpic_2852 ccmE ccmE ccmC ccmC Rpic_1480 Rpic_1480 Rpic_4873 Rpic_4873 Rpic_4872 Rpic_4872 Rpic_4665 Rpic_4665 Rpic_4456 Rpic_4456 Rpic_4363 Rpic_4363 Rpic_4357 Rpic_4357 Rpic_4332 Rpic_4332 Rpic_4262 Rpic_4262 Rpic_4206 Rpic_4206 Rpic_4092 Rpic_4092 Rpic_4058 Rpic_4058 Rpic_4013 Rpic_4013 Rpic_3894 Rpic_3894 Rpic_3609 Rpic_3609 Rpic_3461 Rpic_3461 Rpic_3458 Rpic_3458 Rpic_3453 Rpic_3453 Rpic_3367 Rpic_3367 Rpic_3265 Rpic_3265
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Rpic_0573PFAM: multihaem cytochrome; KEGG: bmu:Bmul_5868 multihaem cytochrome. (168 aa)
kynATryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety. (278 aa)
Rpic_0720Gluconate 2-dehydrogenase (acceptor); KEGG: rso:RSc0772 putative oxidoreductase dehydrogenase (cytochrome c subunit) signal peptide protein. (427 aa)
Rpic_0865PFAM: cytochrome c class I; KEGG: rso:RSc0999 putative periplasmic cytochrome type-C oxidoreductase signal peptide protein. (122 aa)
Rpic_0866KEGG: rso:RSc1000 putative periplasmic cytochrome type-C oxidoreductase signal peptide protein. (132 aa)
Rpic_1104KEGG: rso:RSc1276 probable cytochrome c oxidase (subunit I) transmembrane protein; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family. (485 aa)
Rpic_1105TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: rso:RSc1277 probable cytochrome c oxidase (subunit II) transmembrane protein. (227 aa)
Rpic_2756KEGG: rso:RSc2493 probable signal peptide protein. (446 aa)
Rpic_1641Iron permease FTR1; PFAM: cytochrome c class I; iron permease FTR1; KEGG: rme:Rmet_5945 iron permease FTR1. (642 aa)
Rpic_1698KEGG: ajs:Ajs_1493 hypothetical protein. (158 aa)
Rpic_1791PFAM: cytochrome c class I; KEGG: pol:Bpro_3501 cytochrome c, class I. (224 aa)
Rpic_1817Iron permease FTR1; PFAM: cytochrome c class I; iron permease FTR1; KEGG: rme:Rmet_5945 iron permease FTR1. (640 aa)
Rpic_1855KEGG: rme:Rmet_6340 hypothetical protein. (186 aa)
Rpic_1876KEGG: rme:Rmet_5609 cytochrome c oxidase, subunit I; TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family. (667 aa)
Rpic_2689PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: rso:RSc2425 probable sulfite reductase oxidoreductase protein. (553 aa)
Rpic_2536PFAM: cytochrome c class I; KEGG: rme:Rmet_3424 cytochrome c, class I. (131 aa)
Rpic_2493PFAM: cytochrome c class I; KEGG: reh:H16_B1048 cytochrome c551/c552. (110 aa)
Rpic_2485KEGG: reu:Reut_A1777 cytochrome c-type protein. (161 aa)
Rpic_2255PFAM: protein of unknown function DUF989; KEGG: rso:RSc2115 probable transmembrane protein. (418 aa)
Rpic_2241PFAM: globin; KEGG: rso:RSc2090 putative oxygen-binding protein (globin). (134 aa)
Rpic_2150TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: rso:RSc1995 putative transmembrane succinate dehydrogenase (hydrophobic membrane anchor subunit) oxidoreductase protein. (121 aa)
Rpic_2114KEGG: rso:RS02303 probable transmembrane protein. (426 aa)
Rpic_1889PFAM: Di-haem cytochrome c peroxidase; KEGG: rso:RS01731 probable lipoprotein. (468 aa)
Rpic_3454KEGG: rso:RSc3256 hypothetical protein. (273 aa)
Rpic_0139PFAM: Rubrerythrin; Ferritin Dps family protein; KEGG: reu:Reut_A2901 rubrerythrin:ferritin and Dps. (185 aa)
Rpic_0218Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). (418 aa)
Rpic_0219Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (534 aa)
Rpic_0288PFAM: cytochrome c class I; KEGG: psa:PST_0367 hypothetical protein. (107 aa)
Rpic_0572PFAM: Domain of unknown function DUF1924; KEGG: pna:Pnap_1532 mono-heme class I cytochrome c. (138 aa)
Rpic_3264PFAM: ResB family protein; KEGG: rso:RSc2986 putative cytochrome c-type biogenesis transmembrane protein. (734 aa)
Rpic_3263TIGRFAM: cytochrome c-type biogenesis protein CcsB; PFAM: cytochrome c assembly protein; KEGG: rso:RSc2985 putative transmembrane cytochrome c-type biogenesis transmembrane protein. (395 aa)
msrQFerric reductase domain protein transmembrane component domain; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the r [...] (218 aa)
Rpic_1107Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. (307 aa)
Rpic_3204PFAM: cytochrome c1; KEGG: rso:RSc2927 putative cytochrome c1 precursor transmembrane protein. (247 aa)
Rpic_3162KEGG: rso:RSc2916 probable transmembrane cytochrome o ubiquinol oxidase (subunit I) oxidoreductase protein; TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family. (658 aa)
apaGPFAM: ApaG domain protein; KEGG: rso:RSc2878 ApaG. (124 aa)
Rpic_3055PFAM: cytochrome c assembly protein; KEGG: rso:RSc2810 probable transmembrane protein. (302 aa)
katGCatalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. (721 aa)
Rpic_2852TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: reu:Reut_B4770 cytochrome c-type biogenesis protein CcmF. (672 aa)
ccmECcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. (156 aa)
ccmCHeme exporter protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family. (262 aa)
Rpic_1480KEGG: rme:Rmet_6340 hypothetical protein. (186 aa)
Rpic_4873Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (586 aa)
Rpic_4872PFAM: cytochrome c oxidase subunit II; cytochrome c class I; KEGG: rso:RSp1564 probable cytochrome c oxidase polypeptide II (cytochrome BB3 subunit 2) transmembrane protein. (382 aa)
Rpic_4665KEGG: rso:RS02303 probable transmembrane protein. (427 aa)
Rpic_4456PFAM: cytochrome c class I; KEGG: reh:H16_B1869 cytochrome c, mono-and diheme variants. (388 aa)
Rpic_4363Hypothetical protein; KEGG: pna:Pnap_3162 globin. (193 aa)
Rpic_4357TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: rso:RSc1995 putative transmembrane succinate dehydrogenase (hydrophobic membrane anchor subunit) oxidoreductase protein. (121 aa)
Rpic_4332Hypothetical protein; KEGG: bch:Bcen2424_5824 cytochrome c, class I. (88 aa)
Rpic_4262KEGG: bmu:Bmul_3696 cytochrome P450-like protein. (379 aa)
Rpic_4206PFAM: Di-haem cytochrome c peroxidase; KEGG: rso:RS05063 probable lipoprotein transmembrane. (463 aa)
Rpic_4092PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bch:Bcen2424_1973 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (88 aa)
Rpic_4058PFAM: cytochrome c class I; KEGG: rso:RS02091 probable lipoprotein. (140 aa)
Rpic_4013KEGG: rso:RSp1505 probable nitric oxide reductase (subunit B) transmembrane protein. (758 aa)
Rpic_3894KEGG: rme:Rmet_4636 hypothetical protein. (286 aa)
Rpic_3609PFAM: globin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: rso:RSc3398 probable flavohemoprotein (hemoglobin-like) transmembrane; Belongs to the globin family. (401 aa)
Rpic_3461KEGG: rso:RSc3263 hypothetical signal peptide protein. (118 aa)
Rpic_3458PFAM: cytochrome c class I; KEGG: rso:RSc3260 probable cytochrome c transmembrane protein. (115 aa)
Rpic_3453KEGG: rso:RSc3255 hypothetical protein. (220 aa)
Rpic_3367PFAM: cytochrome c class I; KEGG: rso:RSc3084 probable transmembrane protein. (297 aa)
Rpic_3265PFAM: cytochrome c class I; KEGG: rso:RSc2987 probable oxidoreductase cytochrome c-type signal peptide protein. (219 aa)
Your Current Organism:
Ralstonia pickettii 12J
NCBI taxonomy Id: 402626
Other names: R. pickettii 12J, Ralstonia pickettii str. 12J, Ralstonia pickettii strain 12J
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