STRINGSTRING
Rpic_3803 Rpic_3803 Rpic_3008 Rpic_3008 Rpic_2997 Rpic_2997 Rpic_0099 Rpic_0099 Rpic_4913 Rpic_4913 glk glk Rpic_4074 Rpic_4074 Rpic_3059 Rpic_3059
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Rpic_3803PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: reu:Reut_A2877 putative hydroxylase. (228 aa)
Rpic_3008Monosaccharide-transporting ATPase; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bte:BTH_II1628 L-arabinose ABC transporter, periplasmic L-arabinose-binding protein. (334 aa)
Rpic_2997Monosaccharide-transporting ATPase; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rso:RSc2758 probable L-arabinose-binding periplasmic (PBP) ABC transporter protein. (334 aa)
Rpic_0099PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: bpm:BURPS1710b_A0200 putative hydroxylase. (227 aa)
Rpic_4913KEGG: rso:RSp1633 probable D-xylose-binding periplasmic ABC transporter protein; TIGRFAM: D-xylose ABC transporter, periplasmic substrate-binding protein; PFAM: periplasmic binding protein/LacI transcriptional regulator. (335 aa)
glkGlucokinase; KEGG: rso:RSp1557 probable glucokinase protein; TIGRFAM: glucokinase; PFAM: Glucokinase; Belongs to the bacterial glucokinase family. (351 aa)
Rpic_4074KEGG: bxe:Bxe_B2621 ABC xylose transporter, periplasmic ligand binding protein; TIGRFAM: D-xylose ABC transporter, periplasmic substrate-binding protein; PFAM: periplasmic binding protein/LacI transcriptional regulator. (342 aa)
Rpic_3059Procollagen-proline dioxygenase; KEGG: rso:RSc2814 hypothetical protein; PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit. (288 aa)
Your Current Organism:
Ralstonia pickettii 12J
NCBI taxonomy Id: 402626
Other names: R. pickettii 12J, Ralstonia pickettii str. 12J, Ralstonia pickettii strain 12J
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