STRINGSTRING
Rpic_3242 Rpic_3242 Rpic_0329 Rpic_0329 Rpic_1108 Rpic_1108 Rpic_1934 Rpic_1934 Rpic_2148 Rpic_2148 Rpic_2513 Rpic_2513 Rpic_2904 Rpic_2904
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Rpic_3242TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rso:RSc2964 glutamate synthase subunit beta. (487 aa)
Rpic_0329FAD linked oxidase domain protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: rso:RSc0454 putative oxidoreductase protein. (1345 aa)
Rpic_1108TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: rso:RSc1280 probable iron-sulfur 4Fe-4S ferredoxin transmembrane protein. (487 aa)
Rpic_1934TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; KEGG: rso:RSc1612 putative iron-sulfur binding protein. (469 aa)
Rpic_2148KEGG: rso:RSc1993 succinate dehydrogenase iron-sulfur subunit; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (233 aa)
Rpic_2513TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: bte:BTH_II0362 succinate dehydrogenase, iron-sulfur protein. (235 aa)
Rpic_2904PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: rso:RSc2668 glycolate oxidase iron-sulfur subunit. (418 aa)
Your Current Organism:
Ralstonia pickettii 12J
NCBI taxonomy Id: 402626
Other names: R. pickettii 12J, Ralstonia pickettii str. 12J, Ralstonia pickettii strain 12J
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