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Rpic_0231 Rpic_0231 Rpic_0283 Rpic_0283 Rpic_0386 Rpic_0386 Rpic_0508 Rpic_0508 Rpic_0538 Rpic_0538 Rpic_0546 Rpic_0546 Rpic_1171 Rpic_1171 dinB dinB Rpic_2700 Rpic_2700 Rpic_3792 Rpic_3792 Rpic_3864 Rpic_3864 Rpic_3950 Rpic_3950 Rpic_3991 Rpic_3991 Rpic_4126 Rpic_4126 Rpic_4175 Rpic_4175 Rpic_4179 Rpic_4179 Rpic_4217 Rpic_4217 Rpic_4239 Rpic_4239 Rpic_4466 Rpic_4466 Rpic_4612 Rpic_4612 Rpic_4679 Rpic_4679 Rpic_4688 Rpic_4688 Rpic_4752 Rpic_4752 Rpic_4799 Rpic_4799 Rpic_4854 Rpic_4854 Rpic_4930 Rpic_4930 Rpic_4937 Rpic_4937
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Rpic_0231Diguanylate cyclase with PAS/PAC sensor; KEGG: rso:RSc0375 probable transmembrane protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein. (972 aa)
Rpic_0283KEGG: rfr:Rfer_1983 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; histidine kinase HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein. (1221 aa)
Rpic_0386TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; KEGG: rso:RSc0510 probable transmembrane protein. (685 aa)
Rpic_0508Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); KEGG: rso:RSc0588 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold domain protein; SMART: PAS domain containing protein. (917 aa)
Rpic_0538TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: bxe:Bxe_B2626 periplasmic sensor diguanylate cyclase (GGDEF domain). (585 aa)
Rpic_0546TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bch:Bcen2424_6666 diguanylate cyclase. (499 aa)
Rpic_1171Diguanylate cyclase with PAS/PAC sensor; KEGG: azo:azo0336 PAS/PAC/GGDEF-domain containing protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein. (416 aa)
dinBDNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (357 aa)
Rpic_2700TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rso:RSc2432 probable transmembrane protein. (555 aa)
Rpic_3792Diguanylate cyclase with PAS/PAC sensor; KEGG: rso:RS01984 probable transmembrane protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein. (893 aa)
Rpic_3864TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rfr:Rfer_0005 diguanylate cyclase. (448 aa)
Rpic_3950Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: rso:RS03712 probable transmembrane protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein. (1183 aa)
Rpic_3991TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rso:RS04801 probable transmembrane protein. (505 aa)
Rpic_4126Diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: pen:PSEEN2246 diguanylate cyclase (GGDEF domain). (348 aa)
Rpic_4175TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rso:RS03152 hypothetical protein. (471 aa)
Rpic_4179Diguanylate cyclase with PAS/PAC sensor; KEGG: rso:RS03147 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein. (446 aa)
Rpic_4217Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); KEGG: rso:RS05432 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein. (916 aa)
Rpic_4239TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rso:RS02603 probable transmembrane protein. (695 aa)
Rpic_4466TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rso:RS01894 hypothetical protein. (670 aa)
Rpic_4612Diguanylate cyclase/phosphodiesterase; PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; KEGG: bxe:Bxe_A4283 putative diguanylate cyclase/phosphodiesterase(GGDEF & EAL domains). (610 aa)
Rpic_4679TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bxe:Bxe_B1745 putative diguanylate cyclase (GGDEF domain). (490 aa)
Rpic_4688TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rso:RS00398 hypothetical protein. (338 aa)
Rpic_4752Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: rso:RS00808 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein. (652 aa)
Rpic_4799Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: rso:RS00710 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein. (884 aa)
Rpic_4854TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: reh:H16_B1253 predicted signal transduction protein containingan EAL and a GGDEF domain. (594 aa)
Rpic_4930Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: reh:H16_A0025 predicted signal transduction protein containing PAS, GGDEF and EAL domains; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein. (887 aa)
Rpic_4937Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: saz:Sama_2448 sensory box protein. (980 aa)
Your Current Organism:
Ralstonia pickettii 12J
NCBI taxonomy Id: 402626
Other names: R. pickettii 12J, Ralstonia pickettii str. 12J, Ralstonia pickettii strain 12J
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