4 items (Schizosaccharomyces japonicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SJAG_00177	DNA repair protein Rad60. (449 aa)
	SJAG_02214	SUMO deconjugating enzyme Ulp1. (511 aa)
	SJAG_16454	ULP_PROTEASE domain-containing protein. (722 aa)
	SJAG_03843	Ubiquitin-like domain-containing protein. (117 aa)

Your Current Organism:

Schizosaccharomyces japonicus

NCBI taxonomy Id: 402676
Other names: S. japonicus yFS275, Schizosaccharomyces japonicus yFS275

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SJAG_00177	SJAG_03843	B6JXN7	B6K574	DNA repair protein Rad60.	Ubiquitin-like domain-containing protein.	0.999
SJAG_02214	SJAG_03843	B6K1V4	B6K574	SUMO deconjugating enzyme Ulp1.	Ubiquitin-like domain-containing protein.	0.999
SJAG_02214	SJAG_16454	B6K1V4	T0S115	SUMO deconjugating enzyme Ulp1.	ULP_PROTEASE domain-containing protein.	0.908
SJAG_03843	SJAG_00177	B6K574	B6JXN7	Ubiquitin-like domain-containing protein.	DNA repair protein Rad60.	0.999
SJAG_03843	SJAG_02214	B6K574	B6K1V4	Ubiquitin-like domain-containing protein.	SUMO deconjugating enzyme Ulp1.	0.999
SJAG_03843	SJAG_16454	B6K574	T0S115	Ubiquitin-like domain-containing protein.	ULP_PROTEASE domain-containing protein.	0.991
SJAG_16454	SJAG_02214	T0S115	B6K1V4	ULP_PROTEASE domain-containing protein.	SUMO deconjugating enzyme Ulp1.	0.908
SJAG_16454	SJAG_03843	T0S115	B6K574	ULP_PROTEASE domain-containing protein.	Ubiquitin-like domain-containing protein.	0.991