STRINGSTRING
Plav_0173 Plav_0173 Plav_0283 Plav_0283 Plav_0592 Plav_0592 Plav_0593 Plav_0593 Plav_0594 Plav_0594 Plav_1428 Plav_1428 Plav_1429 Plav_1429 Plav_1430 Plav_1430 Plav_1431 Plav_1431 Plav_1613 Plav_1613 Plav_1621 Plav_1621 Plav_1625 Plav_1625 Plav_1702 Plav_1702 Plav_1705 Plav_1705 Plav_1979 Plav_1979 Plav_2692 Plav_2692 Plav_2817 Plav_2817 Plav_2818 Plav_2818 Plav_3087 Plav_3087 Plav_3098 Plav_3098 Plav_3107 Plav_3107 Plav_3210 Plav_3210
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Plav_0173KEGG: nha:Nham_2663 hypothetical protein. (606 aa)
Plav_0283KEGG: ava:Ava_4757 putative methylisocitrate lyase. (289 aa)
Plav_0592TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: nha:Nham_1097 isocitrate lyase. (432 aa)
Plav_0593TIGRFAM: malate synthase A; PFAM: malate synthase; KEGG: malate synthase; Belongs to the malate synthase family. (541 aa)
Plav_0594PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: bja:bll2454 probable transcriptional regulator. (481 aa)
Plav_1428Citryl-CoA lyase; PFAM: HpcH/HpaI aldolase; KEGG: hne:HNE_3534 citrate lyase, beta subunit; Belongs to the HpcH/HpaI aldolase family. (298 aa)
Plav_1429Hypothetical protein. (55 aa)
Plav_1430PFAM: MaoC domain protein dehydratase; KEGG: rru:Rru_A1201 MaoC-like dehydratase. (349 aa)
Plav_1431Hypothetical protein. (194 aa)
Plav_1613PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rsq:Rsph17025_2567 acyl-CoA dehydrogenase domain protein. (568 aa)
Plav_1621TIGRFAM: crotonyl-CoA reductase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rsh:Rsph17029_2620 crotonyl-CoA reductase. (421 aa)
Plav_1625TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; KEGG: rru:Rru_A3062 methylmalonyl-CoA mutase-like. (667 aa)
Plav_1702TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; KEGG: pde:Pden_3681 methylmalonyl-CoA mutase, large subunit. (718 aa)
Plav_1705TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; KEGG: mag:amb4111 putative periplasmic protein kinase ArgK and related GTPase of G3E family. (346 aa)
Plav_1979Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: bja:blr3940 putative propionyl-CoA carboxylase beta chain. (518 aa)
Plav_2692Carbamoyl-phosphate synthase L chain ATP-binding; PFAM: carboxyl transferase; biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rpa:RPA1450 putative pyruvate carboxylase. (1091 aa)
Plav_2817KEGG: nar:Saro_0897 hypothetical protein. (100 aa)
Plav_2818KEGG: nar:Saro_0897 hypothetical protein. (226 aa)
Plav_3087PFAM: AMP-dependent synthetase and ligase; KEGG: sil:SPO2069 benzoate-coenzyme A ligase, putative. (526 aa)
Plav_3098PFAM: HpcH/HpaI aldolase; KEGG: rrs:RoseRS_4173 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family. (371 aa)
Plav_3107PFAM: MmgE/PrpD family protein; KEGG: hne:HNE_1103 MmgE/PrpD family protein. (447 aa)
Plav_3210Methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mag:amb2575 lactoylglutathione lyase and related lyase. (134 aa)
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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