12 items (Penicillium italicum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PITC_055420	Nucleic acid-binding, OB-fold. (1010 aa)
	PITC_055280	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1397 aa)
	PITC_036540	Ribosomal protein L26/L24P, eukaryotic/archaeal. (133 aa)
	PITC_089570	Uncharacterized protein. (361 aa)
	PITC_001290	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (260 aa)
	PITC_030060	Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1026 aa)
	PITC_031010	Eukaryotic translation initiation factor 5A. (161 aa)
	PITC_061490	Translation protein SH3-like, subgroup. (197 aa)
	PITC_077790	Nucleic acid-binding, OB-fold. (515 aa)
	PITC_052320	Nucleic acid-binding, OB-fold. (254 aa)
	PITC_000210	Ribosomal protein L14. (215 aa)
	PITC_067520	Nucleic acid-binding, OB-fold. (406 aa)

Your Current Organism:

Penicillium italicum

NCBI taxonomy Id: 40296
Other names: CBS 339.48, P. italicum

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PITC_000210	PITC_001290	A0A0A2KRP5	A0A0A2L808	Ribosomal protein L14.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.998
PITC_000210	PITC_031010	A0A0A2KRP5	A0A0A2L6J3	Ribosomal protein L14.	Eukaryotic translation initiation factor 5A.	0.992
PITC_000210	PITC_036540	A0A0A2KRP5	A0A0A2LAL5	Ribosomal protein L14.	Ribosomal protein L26/L24P, eukaryotic/archaeal.	0.999
PITC_000210	PITC_052320	A0A0A2KRP5	A0A0A2KDX9	Ribosomal protein L14.	Nucleic acid-binding, OB-fold.	0.999
PITC_000210	PITC_055280	A0A0A2KRP5	A0A0A2LDP8	Ribosomal protein L14.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.602
PITC_000210	PITC_061490	A0A0A2KRP5	A0A0A2L193	Ribosomal protein L14.	Translation protein SH3-like, subgroup.	0.999
PITC_000210	PITC_067520	A0A0A2KRP5	A0A0A2LH98	Ribosomal protein L14.	Nucleic acid-binding, OB-fold.	0.970
PITC_000210	PITC_077790	A0A0A2KRP5	A0A0A2KX61	Ribosomal protein L14.	Nucleic acid-binding, OB-fold.	0.974
PITC_001290	PITC_000210	A0A0A2L808	A0A0A2KRP5	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Ribosomal protein L14.	0.998
PITC_001290	PITC_031010	A0A0A2L808	A0A0A2L6J3	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Eukaryotic translation initiation factor 5A.	0.990
PITC_001290	PITC_036540	A0A0A2L808	A0A0A2LAL5	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Ribosomal protein L26/L24P, eukaryotic/archaeal.	0.998
PITC_001290	PITC_052320	A0A0A2L808	A0A0A2KDX9	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Nucleic acid-binding, OB-fold.	0.998
PITC_001290	PITC_055280	A0A0A2L808	A0A0A2LDP8	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.	0.602
PITC_001290	PITC_061490	A0A0A2L808	A0A0A2L193	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Translation protein SH3-like, subgroup.	0.998
PITC_001290	PITC_067520	A0A0A2L808	A0A0A2LH98	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Nucleic acid-binding, OB-fold.	0.970
PITC_001290	PITC_077790	A0A0A2L808	A0A0A2KX61	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	Nucleic acid-binding, OB-fold.	0.949
PITC_031010	PITC_000210	A0A0A2L6J3	A0A0A2KRP5	Eukaryotic translation initiation factor 5A.	Ribosomal protein L14.	0.992
PITC_031010	PITC_001290	A0A0A2L6J3	A0A0A2L808	Eukaryotic translation initiation factor 5A.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.990
PITC_031010	PITC_036540	A0A0A2L6J3	A0A0A2LAL5	Eukaryotic translation initiation factor 5A.	Ribosomal protein L26/L24P, eukaryotic/archaeal.	0.985
PITC_031010	PITC_052320	A0A0A2L6J3	A0A0A2KDX9	Eukaryotic translation initiation factor 5A.	Nucleic acid-binding, OB-fold.	0.982