(12 nodes) Mixed, incl. Amidohydrolase family, and Molybdopterin dehydrogenase, FAD-binding network (Streptomyces nodosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJE40914.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (767 aa)
	AJE40915.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (654 aa)
	AJE40916.1	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)
	AJE41272.1	Cytidine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (166 aa)
	AJE41273.1	Cytidine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)
	AJE41971.1	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (416 aa)
	AJE43737.1	N-ethylammeline chlorohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (488 aa)
	AJE43743.1	N-isopropylammelide isopropylaminohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (403 aa)
	AJE43744.1	Cytosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (396 aa)
	AJE44203.1	FAD dependent dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)
	AJE44310.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (487 aa)
	AJE44311.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (83 aa)

Your Current Organism:

Streptomyces nodosus

NCBI taxonomy Id: 40318
Other names: ATCC 14899, ATCC 23942, BCRC 13768, CBS 926.68, CCRC 13768, CCRC:13768, DSM 40109, IFO 12895, ISP 5109, JCM 4297, JCM 4656, KCTC 9035, LMG 19340, LMG:19340, NBRC 12895, NCIMB 12816, NRRL B-2371, NRRL-ISP 5109, RIA 831, S. nodosus

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJE40914.1	AJE40915.1	SNOD_13280	SNOD_13285	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJE40914.1	AJE40916.1	SNOD_13280	SNOD_13290	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
AJE40914.1	AJE41272.1	SNOD_13280	SNOD_15435	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytidine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.826
AJE40914.1	AJE41273.1	SNOD_13280	SNOD_15440	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytidine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.435
AJE40914.1	AJE41971.1	SNOD_13280	SNOD_19500	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.442
AJE40914.1	AJE43737.1	SNOD_13280	SNOD_29790	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-ethylammeline chlorohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.731
AJE40914.1	AJE44203.1	SNOD_13280	SNOD_32580	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD dependent dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AJE40914.1	AJE44310.1	SNOD_13280	SNOD_33255	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
AJE40915.1	AJE40914.1	SNOD_13285	SNOD_13280	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJE40915.1	AJE40916.1	SNOD_13285	SNOD_13290	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
AJE40915.1	AJE41272.1	SNOD_13285	SNOD_15435	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytidine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.727
AJE40915.1	AJE41273.1	SNOD_13285	SNOD_15440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytidine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.435
AJE40915.1	AJE43737.1	SNOD_13285	SNOD_29790	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-ethylammeline chlorohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
AJE40915.1	AJE44203.1	SNOD_13285	SNOD_32580	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD dependent dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
AJE40915.1	AJE44310.1	SNOD_13285	SNOD_33255	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.629
AJE40916.1	AJE40914.1	SNOD_13290	SNOD_13280	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
AJE40916.1	AJE40915.1	SNOD_13290	SNOD_13285	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
AJE40916.1	AJE41272.1	SNOD_13290	SNOD_15435	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytidine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.440
AJE40916.1	AJE41273.1	SNOD_13290	SNOD_15440	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytidine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.440
AJE40916.1	AJE41971.1	SNOD_13290	SNOD_19500	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.448

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