(20 nodes) RNA polymerase sigma-70 like, and Anti-sigma factor, zinc-finger domain superfamily network (Streptomyces nodosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJE39443.1	RNA polymerase sigma factor SigL; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (181 aa)
	AJE39444.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)
	AJE39445.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)
	AJE40923.1	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (769 aa)
	AJE40924.1	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)
	AJE40925.1	RNA polymerase sigma factor SigL; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (196 aa)
	AJE41542.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (815 aa)
	AJE41544.1	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (571 aa)
	AJE41545.1	RNA polymerase sigma factor SigM; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (240 aa)
	AJE41546.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
	AJE41547.1	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)
	AJE41548.1	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thioredoxin family. (110 aa)
	AJE42149.1	RNA polymerase sigma70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (225 aa)
	AJE42430.1	RNA polymerase sigma factor RpoE; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (227 aa)
	AJE42431.1	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (100 aa)
	AJE43200.1	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (114 aa)
	AJE43382.1	RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (171 aa)
	AJE43652.1	RNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (184 aa)
	AJE43653.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (198 aa)
	AJE44040.1	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (199 aa)

Your Current Organism:

Streptomyces nodosus

NCBI taxonomy Id: 40318
Other names: ATCC 14899, ATCC 23942, BCRC 13768, CBS 926.68, CCRC 13768, CCRC:13768, DSM 40109, IFO 12895, ISP 5109, JCM 4297, JCM 4656, KCTC 9035, LMG 19340, LMG:19340, NBRC 12895, NCIMB 12816, NRRL B-2371, NRRL-ISP 5109, RIA 831, S. nodosus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJE39443.1	AJE39444.1	SNOD_04945	SNOD_04950	RNA polymerase sigma factor SigL; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
AJE39443.1	AJE39445.1	SNOD_04945	SNOD_04955	RNA polymerase sigma factor SigL; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AJE39443.1	AJE40924.1	SNOD_04945	SNOD_13330	RNA polymerase sigma factor SigL; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
AJE39443.1	AJE41542.1	SNOD_04945	SNOD_17065	RNA polymerase sigma factor SigL; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.437
AJE39443.1	AJE41545.1	SNOD_04945	SNOD_17080	RNA polymerase sigma factor SigL; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma factor SigM; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.486
AJE39443.1	AJE41546.1	SNOD_04945	SNOD_17085	RNA polymerase sigma factor SigL; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.486
AJE39443.1	AJE42149.1	SNOD_04945	SNOD_20500	RNA polymerase sigma factor SigL; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.695
AJE39443.1	AJE42430.1	SNOD_04945	SNOD_22130	RNA polymerase sigma factor SigL; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma factor RpoE; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.428
AJE39443.1	AJE42431.1	SNOD_04945	SNOD_22135	RNA polymerase sigma factor SigL; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.545
AJE39443.1	AJE43652.1	SNOD_04945	SNOD_29275	RNA polymerase sigma factor SigL; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.723
AJE39443.1	AJE44040.1	SNOD_04945	SNOD_31625	RNA polymerase sigma factor SigL; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.499
AJE39444.1	AJE39443.1	SNOD_04950	SNOD_04945	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma factor SigL; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.771
AJE39444.1	AJE39445.1	SNOD_04950	SNOD_04955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762
AJE39445.1	AJE39443.1	SNOD_04955	SNOD_04945	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma factor SigL; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.988
AJE39445.1	AJE39444.1	SNOD_04955	SNOD_04950	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.762
AJE39445.1	AJE40925.1	SNOD_04955	SNOD_13335	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma factor SigL; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.974
AJE39445.1	AJE41545.1	SNOD_04955	SNOD_17080	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma factor SigM; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.609
AJE39445.1	AJE42149.1	SNOD_04955	SNOD_20500	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.545
AJE39445.1	AJE42430.1	SNOD_04955	SNOD_22130	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma factor RpoE; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.545
AJE39445.1	AJE43200.1	SNOD_04955	SNOD_26605	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967

page 1 of 9

Server load: low (12%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About