(6 nodes) DDE transposase sub-family, and HTH domain, IS21 transposase-type network (Streptomyces nodosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJE38677.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (531 aa)
	AJE38781.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (147 aa)
	AJE38803.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (124 aa)
	AJE38862.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (416 aa)
	AJE43948.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)
	AJE43949.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)

Your Current Organism:

Streptomyces nodosus

NCBI taxonomy Id: 40318
Other names: ATCC 14899, ATCC 23942, BCRC 13768, CBS 926.68, CCRC 13768, CCRC:13768, DSM 40109, IFO 12895, ISP 5109, JCM 4297, JCM 4656, KCTC 9035, LMG 19340, LMG:19340, NBRC 12895, NCIMB 12816, NRRL B-2371, NRRL-ISP 5109, RIA 831, S. nodosus

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJE38677.1	AJE38862.1	SNOD_00020	SNOD_01335	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.619
AJE38677.1	AJE43949.1	SNOD_00020	SNOD_31110	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
AJE38781.1	AJE38862.1	SNOD_00770	SNOD_01335	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
AJE38781.1	AJE43948.1	SNOD_00770	SNOD_31105	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.779
AJE38803.1	AJE38862.1	SNOD_00955	SNOD_01335	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
AJE38803.1	AJE43948.1	SNOD_00955	SNOD_31105	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
AJE38803.1	AJE43949.1	SNOD_00955	SNOD_31110	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.630
AJE38862.1	AJE38677.1	SNOD_01335	SNOD_00020	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.619
AJE38862.1	AJE38781.1	SNOD_01335	SNOD_00770	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
AJE38862.1	AJE38803.1	SNOD_01335	SNOD_00955	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
AJE38862.1	AJE43948.1	SNOD_01335	SNOD_31105	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.562
AJE38862.1	AJE43949.1	SNOD_01335	SNOD_31110	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.570
AJE43948.1	AJE38781.1	SNOD_31105	SNOD_00770	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.779
AJE43948.1	AJE38803.1	SNOD_31105	SNOD_00955	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
AJE43948.1	AJE38862.1	SNOD_31105	SNOD_01335	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.562
AJE43948.1	AJE43949.1	SNOD_31105	SNOD_31110	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.803
AJE43949.1	AJE38677.1	SNOD_31110	SNOD_00020	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
AJE43949.1	AJE38803.1	SNOD_31110	SNOD_00955	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.630
AJE43949.1	AJE38862.1	SNOD_31110	SNOD_01335	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.570
AJE43949.1	AJE43948.1	SNOD_31110	SNOD_31105	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.803

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