(12 nodes) Mixed, incl. DDE transposase sub-family, and Putative transposase IS4/IS5 family network (Streptomyces nodosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJE44514.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (117 aa)
	AJE38699.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa)
	AJE38700.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (60 aa)
	AJE38913.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa)
	AJE38914.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (117 aa)
	AJE38915.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (102 aa)
	AJE38916.1	MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (82 aa)
	AJE38993.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)
	AJE41325.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
	AJE41471.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)
	AJE41472.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (117 aa)
	AJE43763.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)

Your Current Organism:

Streptomyces nodosus

NCBI taxonomy Id: 40318
Other names: ATCC 14899, ATCC 23942, BCRC 13768, CBS 926.68, CCRC 13768, CCRC:13768, DSM 40109, IFO 12895, ISP 5109, JCM 4297, JCM 4656, KCTC 9035, LMG 19340, LMG:19340, NBRC 12895, NCIMB 12816, NRRL B-2371, NRRL-ISP 5109, RIA 831, S. nodosus

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJE38699.1	AJE38700.1	SNOD_00205	SNOD_00210	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.671
AJE38699.1	AJE38914.1	SNOD_00205	SNOD_01710	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
AJE38699.1	AJE41472.1	SNOD_00205	SNOD_16675	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AJE38699.1	AJE44514.1	SNOD_00205	SNOD_00200	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
AJE38700.1	AJE38699.1	SNOD_00210	SNOD_00205	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.671
AJE38700.1	AJE44514.1	SNOD_00210	SNOD_00200	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.671
AJE38913.1	AJE38914.1	SNOD_01705	SNOD_01710	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
AJE38913.1	AJE38915.1	SNOD_01705	SNOD_01715	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
AJE38913.1	AJE38916.1	SNOD_01705	SNOD_01725	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
AJE38913.1	AJE41472.1	SNOD_01705	SNOD_16675	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AJE38913.1	AJE44514.1	SNOD_01705	SNOD_00200	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AJE38914.1	AJE38699.1	SNOD_01710	SNOD_00205	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
AJE38914.1	AJE38913.1	SNOD_01710	SNOD_01705	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
AJE38914.1	AJE38915.1	SNOD_01710	SNOD_01715	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
AJE38914.1	AJE38916.1	SNOD_01710	SNOD_01725	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
AJE38914.1	AJE41471.1	SNOD_01710	SNOD_16670	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
AJE38914.1	AJE43763.1	SNOD_01710	SNOD_29945	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
AJE38915.1	AJE38913.1	SNOD_01715	SNOD_01705	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AJE38915.1	AJE38914.1	SNOD_01715	SNOD_01710	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AJE38915.1	AJE38916.1	SNOD_01715	SNOD_01725	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413

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