(27 nodes) Mixed, incl. Bacterial extracellular solute-binding protein, and ABC-type maltose transporter activity network (Streptomyces nodosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJE38944.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
	AJE38945.1	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (420 aa)
	AJE39094.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	AJE39095.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (464 aa)
	AJE39264.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
	AJE39265.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
	AJE39266.1	Sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (433 aa)
	AJE39940.1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (447 aa)
	AJE40400.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
	AJE40401.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	AJE40402.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (424 aa)
	AJE40816.1	Sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (450 aa)
	AJE40817.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa)
	AJE40818.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
	AJE41306.1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (379 aa)
	AJE42442.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
	AJE42443.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)
	AJE42444.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
	AJE43045.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (482 aa)
	AJE43046.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
	AJE43047.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
	AJE43347.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (419 aa)
	AJE43348.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
	AJE43349.1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
	AJE43856.1	Sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (434 aa)
	AJE43857.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)
	AJE43858.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)

Your Current Organism:

Streptomyces nodosus

NCBI taxonomy Id: 40318
Other names: ATCC 14899, ATCC 23942, BCRC 13768, CBS 926.68, CCRC 13768, CCRC:13768, DSM 40109, IFO 12895, ISP 5109, JCM 4297, JCM 4656, KCTC 9035, LMG 19340, LMG:19340, NBRC 12895, NCIMB 12816, NRRL B-2371, NRRL-ISP 5109, RIA 831, S. nodosus

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJE38944.1	AJE38945.1	SNOD_01890	SNOD_01900	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
AJE38944.1	AJE39095.1	SNOD_01890	SNOD_02875	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.621
AJE38944.1	AJE39265.1	SNOD_01890	SNOD_03900	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
AJE38944.1	AJE39266.1	SNOD_01890	SNOD_03905	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.671
AJE38944.1	AJE39940.1	SNOD_01890	SNOD_07795	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.997
AJE38944.1	AJE40401.1	SNOD_01890	SNOD_10345	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
AJE38944.1	AJE40402.1	SNOD_01890	SNOD_10350	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.788
AJE38944.1	AJE40816.1	SNOD_01890	SNOD_12695	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.831
AJE38944.1	AJE40817.1	SNOD_01890	SNOD_12700	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
AJE38944.1	AJE41306.1	SNOD_01890	SNOD_15620	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.997
AJE38944.1	AJE42442.1	SNOD_01890	SNOD_22190	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
AJE38944.1	AJE42443.1	SNOD_01890	SNOD_22195	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AJE38944.1	AJE43045.1	SNOD_01890	SNOD_25685	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.621
AJE38944.1	AJE43046.1	SNOD_01890	SNOD_25690	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
AJE38944.1	AJE43347.1	SNOD_01890	SNOD_27425	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
AJE38944.1	AJE43348.1	SNOD_01890	SNOD_27430	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
AJE38944.1	AJE43856.1	SNOD_01890	SNOD_30560	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.831
AJE38944.1	AJE43857.1	SNOD_01890	SNOD_30565	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.907
AJE38945.1	AJE38944.1	SNOD_01900	SNOD_01890	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
AJE38945.1	AJE39094.1	SNOD_01900	SNOD_02865	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.629

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