28 items (Streptomyces nodosus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJE43002.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (354 aa)
	AJE44074.1	Protease; Derived by automated computational analysis using gene prediction method: Protein Homology. (522 aa)
	AJE43343.1	Xaa-Pro aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M24B family. (470 aa)
	AJE44517.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (449 aa)
	AJE39035.1	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S33 family. (320 aa)
	AJE39534.1	Tripeptidyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (532 aa)
	AJE39732.1	X-Pro dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)
	AJE40224.1	Derived by automated computational analysis using gene prediction method: Protein Homology. (846 aa)
	AJE40294.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)
	AJE40329.1	Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)
	pepA	Aminopeptidase A; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides. (509 aa)
	map	Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. (285 aa)
	AJE40697.1	Derived by automated computational analysis using gene prediction method: Protein Homology. (870 aa)
	AJE40704.1	Derived by automated computational analysis using gene prediction method: Protein Homology. (878 aa)
	AJE40976.1	Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)
	AJE41441.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	AJE41486.1	Xaa-Pro aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M24B family. (487 aa)
	AJE41774.1	Proteinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (542 aa)
	map-2	Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. (278 aa)
	AJE42397.1	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (511 aa)
	AJE42398.1	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (522 aa)
	AJE42509.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (498 aa)
	AJE42577.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (193 aa)
	AJE42885.1	Zinc metalloprotease; Derived by automated computational analysis using gene prediction method: Protein Homology. (497 aa)
	AJE43103.1	Peptidase M24; Derived by automated computational analysis using gene prediction method: Protein Homology. (381 aa)
	map-3	Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. (259 aa)
	AJE43213.1	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (513 aa)
	AJE43236.1	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (525 aa)

Your Current Organism:

Streptomyces nodosus

NCBI taxonomy Id: 40318
Other names: ATCC 14899, ATCC 23942, BCRC 13768, CBS 926.68, CCRC 13768, CCRC:13768, DSM 40109, IFO 12895, ISP 5109, JCM 4297, JCM 4656, KCTC 9035, LMG 19340, LMG:19340, NBRC 12895, NCIMB 12816, NRRL B-2371, NRRL-ISP 5109, RIA 831, S. nodosus

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJE39035.1	pepA	SNOD_02475	SNOD_10165	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S33 family.	Aminopeptidase A; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.	0.477
AJE40224.1	AJE40697.1	SNOD_09400	SNOD_11995	Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
AJE40224.1	AJE40704.1	SNOD_09400	SNOD_12035	Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
AJE40224.1	AJE41486.1	SNOD_09400	SNOD_16770	Derived by automated computational analysis using gene prediction method: Protein Homology.	Xaa-Pro aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M24B family.	0.562
AJE40224.1	AJE43213.1	SNOD_09400	SNOD_26690	Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
AJE40224.1	AJE43343.1	SNOD_09400	SNOD_27405	Derived by automated computational analysis using gene prediction method: Protein Homology.	Xaa-Pro aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M24B family.	0.550
AJE40224.1	pepA	SNOD_09400	SNOD_10165	Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminopeptidase A; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.	0.938
AJE40329.1	pepA	SNOD_09965	SNOD_10165	Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminopeptidase A; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.	0.412
AJE40697.1	AJE40224.1	SNOD_11995	SNOD_09400	Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
AJE40697.1	AJE40704.1	SNOD_11995	SNOD_12035	Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
AJE40697.1	AJE41486.1	SNOD_11995	SNOD_16770	Derived by automated computational analysis using gene prediction method: Protein Homology.	Xaa-Pro aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M24B family.	0.481
AJE40697.1	AJE43213.1	SNOD_11995	SNOD_26690	Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
AJE40697.1	AJE43343.1	SNOD_11995	SNOD_27405	Derived by automated computational analysis using gene prediction method: Protein Homology.	Xaa-Pro aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M24B family.	0.478
AJE40697.1	pepA	SNOD_11995	SNOD_10165	Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminopeptidase A; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.	0.938
AJE40704.1	AJE40224.1	SNOD_12035	SNOD_09400	Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
AJE40704.1	AJE40697.1	SNOD_12035	SNOD_11995	Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
AJE40704.1	AJE41486.1	SNOD_12035	SNOD_16770	Derived by automated computational analysis using gene prediction method: Protein Homology.	Xaa-Pro aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M24B family.	0.478
AJE40704.1	AJE43213.1	SNOD_12035	SNOD_26690	Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
AJE40704.1	AJE43343.1	SNOD_12035	SNOD_27405	Derived by automated computational analysis using gene prediction method: Protein Homology.	Xaa-Pro aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M24B family.	0.484
AJE40704.1	pepA	SNOD_12035	SNOD_10165	Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminopeptidase A; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.	0.938

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