30 items (Streptomyces nodosus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJE39885.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)
	AJE43948.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)
	AJE44496.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa)
	AJE44106.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (995 aa)
	AJE43949.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)
	AJE43904.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (91 aa)
	AJE43763.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)
	AJE43597.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa)
	AJE43594.1	Mobile element protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (112 aa)
	AJE42959.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (75 aa)
	AJE42709.1	Cell division initiation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa)
	AJE41755.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)
	AJE41736.1	Hypothetical protein; Required for the transposition of the insertion element. (105 aa)
	AJE41472.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (117 aa)
	AJE41471.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)
	AJE41339.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)
	AJE41179.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)
	AJE40667.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)
	AJE40452.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (411 aa)
	AJE39128.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (85 aa)
	AJE38914.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (117 aa)
	AJE38913.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa)
	AJE38879.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (135 aa)
	AJE38803.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (124 aa)
	AJE44515.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (120 aa)
	AJE38781.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (147 aa)
	AJE38767.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa)
	AJE38724.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	AJE38699.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa)
	AJE44514.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (117 aa)

Your Current Organism:

Streptomyces nodosus

NCBI taxonomy Id: 40318
Other names: ATCC 14899, ATCC 23942, BCRC 13768, CBS 926.68, CCRC 13768, CCRC:13768, DSM 40109, IFO 12895, ISP 5109, JCM 4297, JCM 4656, KCTC 9035, LMG 19340, LMG:19340, NBRC 12895, NCIMB 12816, NRRL B-2371, NRRL-ISP 5109, RIA 831, S. nodosus

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJE38699.1	AJE38767.1	SNOD_00205	SNOD_00665	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.446
AJE38699.1	AJE38914.1	SNOD_00205	SNOD_01710	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
AJE38699.1	AJE41472.1	SNOD_00205	SNOD_16675	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AJE38699.1	AJE44514.1	SNOD_00205	SNOD_00200	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
AJE38724.1	AJE40452.1	SNOD_00395	SNOD_10660	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
AJE38724.1	AJE43594.1	SNOD_00395	SNOD_28910	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mobile element protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.450
AJE38767.1	AJE38699.1	SNOD_00665	SNOD_00205	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.446
AJE38767.1	AJE38803.1	SNOD_00665	SNOD_00955	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.519
AJE38767.1	AJE38913.1	SNOD_00665	SNOD_01705	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.451
AJE38767.1	AJE41471.1	SNOD_00665	SNOD_16670	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.457
AJE38767.1	AJE43949.1	SNOD_00665	SNOD_31110	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.664
AJE38781.1	AJE38914.1	SNOD_00770	SNOD_01710	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
AJE38781.1	AJE41472.1	SNOD_00770	SNOD_16675	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AJE38781.1	AJE43948.1	SNOD_00770	SNOD_31105	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.779
AJE38781.1	AJE44514.1	SNOD_00770	SNOD_00200	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
AJE38803.1	AJE38767.1	SNOD_00955	SNOD_00665	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.519
AJE38803.1	AJE38914.1	SNOD_00955	SNOD_01710	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.757
AJE38803.1	AJE41472.1	SNOD_00955	SNOD_16675	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.756
AJE38803.1	AJE43904.1	SNOD_00955	SNOD_30865	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
AJE38803.1	AJE43948.1	SNOD_00955	SNOD_31105	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768

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