Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AJE38706.1 | AJE40087.1 | SNOD_00245 | SNOD_08625 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | CRISPR-associated protein Cas2; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.846 |
| AJE39252.1 | AJE40460.1 | SNOD_03830 | SNOD_10705 | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | Acid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.917 |
| AJE40085.1 | AJE40087.1 | SNOD_08615 | SNOD_08625 | CRISPR-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | CRISPR-associated protein Cas2; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.948 |
| AJE40087.1 | AJE38706.1 | SNOD_08625 | SNOD_00245 | CRISPR-associated protein Cas2; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.846 |
| AJE40087.1 | AJE40085.1 | SNOD_08625 | SNOD_08615 | CRISPR-associated protein Cas2; Derived by automated computational analysis using gene prediction method: Protein Homology. | CRISPR-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.948 |
| AJE40460.1 | AJE39252.1 | SNOD_10705 | SNOD_03830 | Acid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.917 |
| AJE40460.1 | rph | SNOD_10705 | SNOD_13100 | Acid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.455 |
| AJE40627.1 | rnz | SNOD_11600 | SNOD_11555 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. | 0.628 |
| AJE40661.1 | orn | SNOD_11790 | SNOD_12640 | Derived by automated computational analysis using gene prediction method: Protein Homology. | Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | 0.535 |
| AJE40661.1 | rnc | SNOD_11790 | SNOD_23715 | Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.453 |
| AJE40661.1 | rnj | SNOD_11790 | SNOD_24425 | Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribonuclease; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | 0.613 |
| AJE40661.1 | rnz | SNOD_11790 | SNOD_11555 | Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. | 0.675 |
| AJE40661.1 | rph | SNOD_11790 | SNOD_13100 | Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.834 |
| AJE40884.1 | rph | SNOD_13115 | SNOD_13100 | Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.660 |
| AJE42380.1 | rnc | SNOD_21815 | SNOD_23715 | Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.889 |
| AJE42965.1 | rnj | SNOD_25210 | SNOD_24425 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribonuclease; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | 0.414 |
| AJE42965.1 | rph | SNOD_25210 | SNOD_13100 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.458 |
| AJE43961.1 | rnj | SNOD_31175 | SNOD_24425 | Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribonuclease; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | 0.557 |
| orn | AJE40661.1 | SNOD_12640 | SNOD_11790 | Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.535 |
| orn | rnc | SNOD_12640 | SNOD_23715 | Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.460 |
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