Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AJE38817.1 | AJE38958.1 | SNOD_01060 | SNOD_02000 | ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Taurine dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.499 |
| AJE38817.1 | AJE38960.1 | SNOD_01060 | SNOD_02010 | ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.709 |
| AJE38817.1 | AJE38961.1 | SNOD_01060 | SNOD_02015 | ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.928 |
| AJE38817.1 | AJE39118.1 | SNOD_01060 | SNOD_03005 | ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | NADPH-dependent FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.513 |
| AJE38817.1 | AJE41886.1 | SNOD_01060 | SNOD_19045 | ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.572 |
| AJE38817.1 | AJE43125.1 | SNOD_01060 | SNOD_26170 | ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Sulfate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.917 |
| AJE38817.1 | AJE43898.1 | SNOD_01060 | SNOD_30830 | ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.944 |
| AJE38817.1 | AJE43900.1 | SNOD_01060 | SNOD_30840 | ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.971 |
| AJE38817.1 | AJE44144.1 | SNOD_01060 | SNOD_32220 | ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Taurine dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.499 |
| AJE38817.1 | AJE44356.1 | SNOD_01060 | SNOD_33515 | ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Taurine dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.499 |
| AJE38817.1 | AJE44438.1 | SNOD_01060 | SNOD_33980 | ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | NADPH-dependent FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.513 |
| AJE38817.1 | ssuB | SNOD_01060 | SNOD_30835 | ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Sulfonate ABC transporter ATP-binding protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system. | 0.688 |
| AJE38958.1 | AJE38817.1 | SNOD_02000 | SNOD_01060 | Taurine dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.499 |
| AJE38958.1 | AJE38959.1 | SNOD_02000 | SNOD_02005 | Taurine dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.934 |
| AJE38958.1 | AJE38960.1 | SNOD_02000 | SNOD_02010 | Taurine dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.954 |
| AJE38958.1 | AJE38961.1 | SNOD_02000 | SNOD_02015 | Taurine dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.920 |
| AJE38958.1 | AJE39118.1 | SNOD_02000 | SNOD_03005 | Taurine dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | NADPH-dependent FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.756 |
| AJE38958.1 | AJE39635.1 | SNOD_02000 | SNOD_06065 | Taurine dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.718 |
| AJE38958.1 | AJE41886.1 | SNOD_02000 | SNOD_19045 | Taurine dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.764 |
| AJE38958.1 | AJE42912.1 | SNOD_02000 | SNOD_24850 | Taurine dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.499 |
page 1 of 27