(45 nodes) Small-subunit processome, and U3 snoRNA binding network (Batrachochytrium dendrobatidis JEL423)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BDEG_20056	Uncharacterized protein. (307 aa)
	BDEG_20155	Uncharacterized protein. (671 aa)
	BDEG_20236	18S rRNA biogenesis protein RCL1. (378 aa)
	NAT10	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1173 aa)
	BDEG_20331	WD_REPEATS_REGION domain-containing protein. (491 aa)
	BDEG_20725	Nop domain-containing protein. (515 aa)
	BDEG_20642	PINc domain-containing protein. (193 aa)
	BDEG_20580	Uncharacterized protein; Belongs to the DEAD box helicase family. (553 aa)
	BDEG_20921	WD_REPEATS_REGION domain-containing protein. (899 aa)
	BDEG_20953	Uncharacterized protein; Belongs to the DEAD box helicase family. (487 aa)
	BDEG_21190	WD_REPEATS_REGION domain-containing protein. (613 aa)
	BDEG_21533	Uncharacterized protein. (1123 aa)
	BDEG_22275	Uncharacterized protein; Belongs to the DEAD box helicase family. (513 aa)
	BDEG_22853	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (420 aa)
	BDEG_23062	WD_REPEATS_REGION domain-containing protein. (877 aa)
	BDEG_22855	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (369 aa)
	BDEG_22913	WD_REPEATS_REGION domain-containing protein. (647 aa)
	BDEG_23032	CBF domain-containing protein. (93 aa)
	BDEG_23031	CBF domain-containing protein. (376 aa)
	BDEG_23488	WD_REPEATS_REGION domain-containing protein. (560 aa)
	BDEG_23517	NUC153 domain-containing protein. (698 aa)
	BDEG_22851	U3 small nucleolar RNA-associated protein 22. (1256 aa)
	BDEG_23265	Uncharacterized protein. (351 aa)
	BDEG_24264	Uncharacterized protein. (527 aa)
	BDEG_24843	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (279 aa)
	BDEG_24861	Uncharacterized protein. (376 aa)
	BDEG_24717	Uncharacterized protein. (903 aa)
	BDEG_25067	Sas10 domain-containing protein. (634 aa)
	BDEG_25377	Brix domain-containing protein. (247 aa)
	BDEG_25229	Uncharacterized protein. (1115 aa)
	BDEG_25706	BP28CT domain-containing protein. (2101 aa)
	BDEG_25734	Uncharacterized protein. (994 aa)
	BDEG_25435	WD_REPEATS_REGION domain-containing protein. (975 aa)
	BDEG_26538	Fcf2 domain-containing protein. (264 aa)
	BDEG_26914	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (131 aa)
	BDEG_27013	S4 RNA-binding domain-containing protein. (182 aa)
	BDEG_27103	ANAPC4_WD40 domain-containing protein. (866 aa)
	BDEG_26920	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (704 aa)
	BDEG_27354	Uncharacterized protein. (1956 aa)
	BDEG_27409	WD_REPEATS_REGION domain-containing protein. (499 aa)
	BDEG_27339	Nop domain-containing protein. (502 aa)
	BDEG_27561	rRNA 2'-O-methyltransferase fibrillarin. (329 aa)
	BDEG_27593	DRIM domain-containing protein. (2834 aa)
	BDEG_28205	WD_REPEATS_REGION domain-containing protein. (580 aa)
	BDEG_28262	WD_REPEATS_REGION domain-containing protein. (773 aa)

Your Current Organism:

Batrachochytrium dendrobatidis JEL423

NCBI taxonomy Id: 403673
Other names: B. dendrobatidis JEL423

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDEG_20056	BDEG_20155	A0A177W6Z9	A0A177W785	Uncharacterized protein.	Uncharacterized protein.	0.989
BDEG_20056	BDEG_20236	A0A177W6Z9	A0A177W8C8	Uncharacterized protein.	18S rRNA biogenesis protein RCL1.	0.985
BDEG_20056	BDEG_20331	A0A177W6Z9	A0A177W8V9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.998
BDEG_20056	BDEG_20580	A0A177W6Z9	A0A177W9L4	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.975
BDEG_20056	BDEG_20642	A0A177W6Z9	A0A177W9L2	Uncharacterized protein.	PINc domain-containing protein.	0.999
BDEG_20056	BDEG_20725	A0A177W6Z9	A0A177W954	Uncharacterized protein.	Nop domain-containing protein.	0.956
BDEG_20056	BDEG_20921	A0A177W6Z9	A0A177WAI8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.989
BDEG_20056	BDEG_20953	A0A177W6Z9	A0A177WAR7	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.987
BDEG_20056	BDEG_21190	A0A177W6Z9	A0A177WBM2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.954
BDEG_20056	BDEG_21533	A0A177W6Z9	A0A177WDR4	Uncharacterized protein.	Uncharacterized protein.	0.987
BDEG_20056	BDEG_22275	A0A177W6Z9	A0A177WDZ6	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.979
BDEG_20056	BDEG_22851	A0A177W6Z9	A0A177WHY2	Uncharacterized protein.	U3 small nucleolar RNA-associated protein 22.	0.995
BDEG_20056	BDEG_22853	A0A177W6Z9	A0A177WG07	Uncharacterized protein.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.980
BDEG_20056	BDEG_22855	A0A177W6Z9	A0A177WGV2	Uncharacterized protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
BDEG_20056	BDEG_22913	A0A177W6Z9	A0A177WGX9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.986
BDEG_20056	BDEG_23031	A0A177W6Z9	A0A177WHJ9	Uncharacterized protein.	CBF domain-containing protein.	0.966
BDEG_20056	BDEG_23032	A0A177W6Z9	A0A177WHF6	Uncharacterized protein.	CBF domain-containing protein.	0.966
BDEG_20056	BDEG_23062	A0A177W6Z9	A0A177WGE4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.969
BDEG_20056	BDEG_23265	A0A177W6Z9	A0A177WI07	Uncharacterized protein.	Uncharacterized protein.	0.977
BDEG_20056	BDEG_23488	A0A177W6Z9	A0A177WHS0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.998