(12 nodes) Small-subunit processome, and Alpha/beta knot methyltransferases network (Batrachochytrium dendrobatidis JEL423)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BDEG_20056	Uncharacterized protein. (307 aa)
	BDEG_20331	WD_REPEATS_REGION domain-containing protein. (491 aa)
	BDEG_20642	PINc domain-containing protein. (193 aa)
	BDEG_20953	Uncharacterized protein; Belongs to the DEAD box helicase family. (487 aa)
	BDEG_22853	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (420 aa)
	BDEG_22855	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (369 aa)
	BDEG_23488	WD_REPEATS_REGION domain-containing protein. (560 aa)
	BDEG_24843	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (279 aa)
	BDEG_24717	Uncharacterized protein. (903 aa)
	BDEG_25067	Sas10 domain-containing protein. (634 aa)
	BDEG_27354	Uncharacterized protein. (1956 aa)
	BDEG_27593	DRIM domain-containing protein. (2834 aa)

Your Current Organism:

Batrachochytrium dendrobatidis JEL423

NCBI taxonomy Id: 403673
Other names: B. dendrobatidis JEL423

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDEG_20056	BDEG_20331	A0A177W6Z9	A0A177W8V9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.998
BDEG_20056	BDEG_20642	A0A177W6Z9	A0A177W9L2	Uncharacterized protein.	PINc domain-containing protein.	0.999
BDEG_20056	BDEG_20953	A0A177W6Z9	A0A177WAR7	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.987
BDEG_20056	BDEG_22853	A0A177W6Z9	A0A177WG07	Uncharacterized protein.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.980
BDEG_20056	BDEG_22855	A0A177W6Z9	A0A177WGV2	Uncharacterized protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
BDEG_20056	BDEG_23488	A0A177W6Z9	A0A177WHS0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.998
BDEG_20056	BDEG_24717	A0A177W6Z9	A0A177WMN9	Uncharacterized protein.	Uncharacterized protein.	0.999
BDEG_20056	BDEG_24843	A0A177W6Z9	A0A177WM67	Uncharacterized protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.998
BDEG_20056	BDEG_25067	A0A177W6Z9	A0A177WNP6	Uncharacterized protein.	Sas10 domain-containing protein.	0.997
BDEG_20056	BDEG_27354	A0A177W6Z9	A0A177WVI5	Uncharacterized protein.	Uncharacterized protein.	0.997
BDEG_20056	BDEG_27593	A0A177W6Z9	A0A177WXK2	Uncharacterized protein.	DRIM domain-containing protein.	0.998
BDEG_20331	BDEG_20056	A0A177W8V9	A0A177W6Z9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.998
BDEG_20331	BDEG_20642	A0A177W8V9	A0A177W9L2	WD_REPEATS_REGION domain-containing protein.	PINc domain-containing protein.	0.998
BDEG_20331	BDEG_20953	A0A177W8V9	A0A177WAR7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.982
BDEG_20331	BDEG_22853	A0A177W8V9	A0A177WG07	WD_REPEATS_REGION domain-containing protein.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.979
BDEG_20331	BDEG_22855	A0A177W8V9	A0A177WGV2	WD_REPEATS_REGION domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
BDEG_20331	BDEG_23488	A0A177W8V9	A0A177WHS0	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
BDEG_20331	BDEG_24717	A0A177W8V9	A0A177WMN9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.998
BDEG_20331	BDEG_24843	A0A177W8V9	A0A177WM67	WD_REPEATS_REGION domain-containing protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.998
BDEG_20331	BDEG_25067	A0A177W8V9	A0A177WNP6	WD_REPEATS_REGION domain-containing protein.	Sas10 domain-containing protein.	0.998