STRINGSTRING
BDEG_28646 BDEG_28646 BDEG_20273 BDEG_20273 BDEG_20720 BDEG_20720 BDEG_21188 BDEG_21188 BDEG_21125 BDEG_21125 LSM4 LSM4 BDEG_22025 BDEG_22025 BDEG_22073 BDEG_22073 BDEG_22217 BDEG_22217 BDEG_22266 BDEG_22266 BDEG_22349 BDEG_22349 BDEG_23126 BDEG_23126 LSM8 LSM8 BDEG_23560 BDEG_23560 BDEG_23992 BDEG_23992 BDEG_23722 BDEG_23722 BDEG_23868 BDEG_23868 BDEG_24118 BDEG_24118 BDEG_23638 BDEG_23638 BDEG_23965 BDEG_23965 BDEG_24419 BDEG_24419 BDEG_24583 BDEG_24583 BDEG_25057 BDEG_25057 BDEG_24834 BDEG_24834 BDEG_25047 BDEG_25047 BDEG_25423 BDEG_25423 BDEG_25270 BDEG_25270 LSM3 LSM3 BDEG_25755 BDEG_25755 BDEG_26477 BDEG_26477 BDEG_27306 BDEG_27306 BDEG_27319 BDEG_27319 BDEG_27263 BDEG_27263 BDEG_27750 BDEG_27750 BDEG_28077 BDEG_28077 BDEG_27653 BDEG_27653 BDEG_28152 BDEG_28152 BDEG_28241 BDEG_28241 BDEG_28378 BDEG_28378
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BDEG_28646Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (91 aa)
BDEG_20273Sm domain-containing protein. (195 aa)
BDEG_20720Uncharacterized protein. (262 aa)
BDEG_21188Uncharacterized protein. (1306 aa)
BDEG_21125Tr-type G domain-containing protein. (983 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (132 aa)
BDEG_22025Matrin-type domain-containing protein. (251 aa)
BDEG_22073Pre-mRNA-splicing factor spp42. (3765 aa)
BDEG_22217Small nuclear ribonucleoprotein Sm D3. (128 aa)
BDEG_22266U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
BDEG_22349Sm domain-containing protein. (159 aa)
BDEG_23126Uncharacterized protein. (131 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
BDEG_23560WD_REPEATS_REGION domain-containing protein. (363 aa)
BDEG_23992U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (217 aa)
BDEG_23722Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family. (142 aa)
BDEG_23868Uncharacterized protein. (235 aa)
BDEG_24118Uncharacterized protein; Belongs to the DEAD box helicase family. (740 aa)
BDEG_23638Uncharacterized protein. (2233 aa)
BDEG_23965WD_REPEATS_REGION domain-containing protein. (542 aa)
BDEG_24419Small nuclear ribonucleoprotein F. (68 aa)
BDEG_24583PHD finger-like domain-containing protein 5A. (110 aa)
BDEG_25057Uncharacterized protein. (937 aa)
BDEG_24834SAP domain-containing protein. (658 aa)
BDEG_25047CPSF_A domain-containing protein. (1224 aa)
BDEG_25423Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (124 aa)
BDEG_25270Uncharacterized protein. (786 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (105 aa)
BDEG_25755Nop domain-containing protein. (506 aa)
BDEG_26477Uncharacterized protein. (396 aa)
BDEG_27306Uncharacterized protein. (308 aa)
BDEG_27319SF3b1 domain-containing protein. (1274 aa)
BDEG_27263Uncharacterized protein. (720 aa)
BDEG_27750Matrin-type domain-containing protein. (564 aa)
BDEG_28077RRM domain-containing protein. (277 aa)
BDEG_27653Small nuclear ribonucleoprotein Sm D2. (115 aa)
BDEG_28152U6 snRNA-associated Sm-like protein LSm6. (79 aa)
BDEG_28241Uncharacterized protein. (1421 aa)
BDEG_28378RRM domain-containing protein. (120 aa)
Your Current Organism:
Batrachochytrium dendrobatidis JEL423
NCBI taxonomy Id: 403673
Other names: B. dendrobatidis JEL423
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