(10 nodes) TBP-class protein binding network (Batrachochytrium dendrobatidis JEL423)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BDEG_22921	Uncharacterized protein. (2044 aa)
	BDEG_27930	TFIID_20kDa domain-containing protein. (258 aa)
	BDEG_27909	TIP120 domain-containing protein. (1231 aa)
	BDEG_26639	WD_REPEATS_REGION domain-containing protein. (521 aa)
	BDEG_26017	Uncharacterized protein. (508 aa)
	BDEG_25463	TFIIB-type domain-containing protein. (335 aa)
	BDEG_25246	TFIIB-type domain-containing protein. (483 aa)
	BDEG_23670	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (106 aa)
	BDEG_23022	Bromo domain-containing protein. (1244 aa)
	BDEG_22556	TFIID_20kDa domain-containing protein. (1148 aa)

Your Current Organism:

Batrachochytrium dendrobatidis JEL423

NCBI taxonomy Id: 403673
Other names: B. dendrobatidis JEL423

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDEG_22556	BDEG_22921	A0A177WEV4	A0A177WH81	TFIID_20kDa domain-containing protein.	Uncharacterized protein.	0.530
BDEG_22556	BDEG_23022	A0A177WEV4	A0A177WHE6	TFIID_20kDa domain-containing protein.	Bromo domain-containing protein.	0.999
BDEG_22556	BDEG_23670	A0A177WEV4	A0A177WJA2	TFIID_20kDa domain-containing protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.879
BDEG_22556	BDEG_25463	A0A177WEV4	A0A177WQ41	TFIID_20kDa domain-containing protein.	TFIIB-type domain-containing protein.	0.918
BDEG_22556	BDEG_26639	A0A177WEV4	A0A177WSZ9	TFIID_20kDa domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.839
BDEG_22921	BDEG_22556	A0A177WH81	A0A177WEV4	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.530
BDEG_22921	BDEG_23022	A0A177WH81	A0A177WHE6	Uncharacterized protein.	Bromo domain-containing protein.	0.468
BDEG_22921	BDEG_25463	A0A177WH81	A0A177WQ41	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.577
BDEG_22921	BDEG_27930	A0A177WH81	A0A177WXA9	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.400
BDEG_23022	BDEG_22556	A0A177WHE6	A0A177WEV4	Bromo domain-containing protein.	TFIID_20kDa domain-containing protein.	0.999
BDEG_23022	BDEG_22921	A0A177WHE6	A0A177WH81	Bromo domain-containing protein.	Uncharacterized protein.	0.468
BDEG_23022	BDEG_23670	A0A177WHE6	A0A177WJA2	Bromo domain-containing protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.899
BDEG_23022	BDEG_25463	A0A177WHE6	A0A177WQ41	Bromo domain-containing protein.	TFIIB-type domain-containing protein.	0.969
BDEG_23022	BDEG_27930	A0A177WHE6	A0A177WXA9	Bromo domain-containing protein.	TFIID_20kDa domain-containing protein.	0.970
BDEG_23670	BDEG_22556	A0A177WJA2	A0A177WEV4	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	TFIID_20kDa domain-containing protein.	0.879
BDEG_23670	BDEG_23022	A0A177WJA2	A0A177WHE6	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	Bromo domain-containing protein.	0.899
BDEG_23670	BDEG_25463	A0A177WJA2	A0A177WQ41	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	TFIIB-type domain-containing protein.	0.978
BDEG_23670	BDEG_27930	A0A177WJA2	A0A177WXA9	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	TFIID_20kDa domain-containing protein.	0.840
BDEG_25463	BDEG_22556	A0A177WQ41	A0A177WEV4	TFIIB-type domain-containing protein.	TFIID_20kDa domain-containing protein.	0.918
BDEG_25463	BDEG_22921	A0A177WQ41	A0A177WH81	TFIIB-type domain-containing protein.	Uncharacterized protein.	0.577