(18 nodes) snRNA binding network (Batrachochytrium dendrobatidis JEL423)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BDEG_25459	C3H1-type domain-containing protein. (308 aa)
	BDEG_26244	RRM domain-containing protein. (226 aa)
	BDEG_20158	Bin3-type SAM domain-containing protein. (383 aa)
	BDEG_23868	Uncharacterized protein. (235 aa)
	BDEG_20720	Uncharacterized protein. (262 aa)
	BDEG_21125	Tr-type G domain-containing protein. (983 aa)
	BDEG_26477	Uncharacterized protein. (396 aa)
	BDEG_28277	Cyclic nucleotide-binding domain-containing protein. (258 aa)
	BDEG_28077	RRM domain-containing protein. (277 aa)
	BDEG_23829	RRM domain-containing protein. (401 aa)
	BDEG_23992	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (217 aa)
	BDEG_23514	Uncharacterized protein. (674 aa)
	BDEG_23515	RRM domain-containing protein. (146 aa)
	BDEG_22073	Pre-mRNA-splicing factor spp42. (3765 aa)
	BDEG_21770	Uncharacterized protein. (497 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (132 aa)
	BDEG_23965	WD_REPEATS_REGION domain-containing protein. (542 aa)
	BDEG_25047	CPSF_A domain-containing protein. (1224 aa)

Your Current Organism:

Batrachochytrium dendrobatidis JEL423

NCBI taxonomy Id: 403673
Other names: B. dendrobatidis JEL423

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDEG_20158	BDEG_23514	A0A177W887	A0A177WJ40	Bin3-type SAM domain-containing protein.	Uncharacterized protein.	0.641
BDEG_20158	BDEG_23515	A0A177W887	A0A177WJ11	Bin3-type SAM domain-containing protein.	RRM domain-containing protein.	0.641
BDEG_20158	BDEG_23965	A0A177W887	A0A177WLD8	Bin3-type SAM domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.588
BDEG_20158	LSM4	A0A177W887	A0A177WBK8	Bin3-type SAM domain-containing protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.438
BDEG_20720	BDEG_21125	A0A177W8X2	A0A177WB91	Uncharacterized protein.	Tr-type G domain-containing protein.	0.880
BDEG_20720	BDEG_22073	A0A177W8X2	A0A177WDJ3	Uncharacterized protein.	Pre-mRNA-splicing factor spp42.	0.876
BDEG_20720	BDEG_23868	A0A177W8X2	A0A177WJV2	Uncharacterized protein.	Uncharacterized protein.	0.751
BDEG_20720	BDEG_23965	A0A177W8X2	A0A177WLD8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.818
BDEG_20720	BDEG_23992	A0A177W8X2	A0A177WJB5	Uncharacterized protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.969
BDEG_20720	BDEG_25047	A0A177W8X2	A0A177WP56	Uncharacterized protein.	CPSF_A domain-containing protein.	0.942
BDEG_20720	BDEG_25459	A0A177W8X2	A0A177WR93	Uncharacterized protein.	C3H1-type domain-containing protein.	0.857
BDEG_20720	BDEG_26244	A0A177W8X2	A0A177WRT5	Uncharacterized protein.	RRM domain-containing protein.	0.894
BDEG_20720	BDEG_26477	A0A177W8X2	A0A177WSM1	Uncharacterized protein.	Uncharacterized protein.	0.926
BDEG_20720	BDEG_28077	A0A177W8X2	A0A177WXQ4	Uncharacterized protein.	RRM domain-containing protein.	0.894
BDEG_20720	BDEG_28277	A0A177W8X2	A0A177WYT1	Uncharacterized protein.	Cyclic nucleotide-binding domain-containing protein.	0.966
BDEG_20720	LSM4	A0A177W8X2	A0A177WBK8	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.861
BDEG_21125	BDEG_20720	A0A177WB91	A0A177W8X2	Tr-type G domain-containing protein.	Uncharacterized protein.	0.880
BDEG_21125	BDEG_22073	A0A177WB91	A0A177WDJ3	Tr-type G domain-containing protein.	Pre-mRNA-splicing factor spp42.	0.999
BDEG_21125	BDEG_23514	A0A177WB91	A0A177WJ40	Tr-type G domain-containing protein.	Uncharacterized protein.	0.462
BDEG_21125	BDEG_23515	A0A177WB91	A0A177WJ11	Tr-type G domain-containing protein.	RRM domain-containing protein.	0.462