STRINGSTRING
BDEG_23725 BDEG_23725 BDEG_24264 BDEG_24264 BDEG_24116 BDEG_24116 BDEG_24843 BDEG_24843 BDEG_24861 BDEG_24861 BDEG_24717 BDEG_24717 BDEG_24725 BDEG_24725 BDEG_23644 BDEG_23644 BDEG_28315 BDEG_28315 BDEG_28214 BDEG_28214 BDEG_28262 BDEG_28262 BDEG_27409 BDEG_27409 BDEG_27354 BDEG_27354 BDEG_27008 BDEG_27008 BDEG_20580 BDEG_20580 BDEG_20642 BDEG_20642 BDEG_26920 BDEG_26920 BDEG_27103 BDEG_27103 BDEG_20771 BDEG_20771 TSR3 TSR3 BDEG_26338 BDEG_26338 BDEG_26914 BDEG_26914 BDEG_26538 BDEG_26538 BDEG_25435 BDEG_25435 BDEG_20052 BDEG_20052 BDEG_20155 BDEG_20155 BDEG_20603 BDEG_20603 NAT10 NAT10 BDEG_20331 BDEG_20331 BDEG_25734 BDEG_25734 BDEG_25229 BDEG_25229 BDEG_25371 BDEG_25371 BDEG_25067 BDEG_25067 TSR3-2 TSR3-2 BDEG_23517 BDEG_23517 BDEG_23488 BDEG_23488 BDEG_23031 BDEG_23031 BDEG_23032 BDEG_23032 BDEG_22913 BDEG_22913 BDEG_22349 BDEG_22349 BDEG_22470 BDEG_22470 BDEG_22049 BDEG_22049 BDEG_21533 BDEG_21533 BDEG_21318 BDEG_21318 BDEG_21190 BDEG_21190 BDEG_21178 BDEG_21178 BDEG_20921 BDEG_20921
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BDEG_23725Uncharacterized protein. (342 aa)
BDEG_24264Uncharacterized protein. (527 aa)
BDEG_2411620S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (446 aa)
BDEG_24843U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (279 aa)
BDEG_24861Uncharacterized protein. (376 aa)
BDEG_24717Uncharacterized protein. (903 aa)
BDEG_24725RIO domain-containing protein. (531 aa)
BDEG_23644Uncharacterized protein. (1485 aa)
BDEG_28315Ribosomal protein S11. (218 aa)
BDEG_28214BUD22 domain-containing protein. (555 aa)
BDEG_28262WD_REPEATS_REGION domain-containing protein. (773 aa)
BDEG_27409WD_REPEATS_REGION domain-containing protein. (499 aa)
BDEG_27354Uncharacterized protein. (1956 aa)
BDEG_27008Uncharacterized protein. (296 aa)
BDEG_20580Uncharacterized protein; Belongs to the DEAD box helicase family. (553 aa)
BDEG_20642PINc domain-containing protein. (193 aa)
BDEG_26920U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (704 aa)
BDEG_27103ANAPC4_WD40 domain-containing protein. (866 aa)
BDEG_20771NUC173 domain-containing protein. (1451 aa)
TSR3Ribosome biogenesis protein TSR3; Ribosome biogenesis protein required for processing 35S pre- rRNA at site D; Belongs to the TSR3 family. (296 aa)
BDEG_26338Uncharacterized protein. (457 aa)
BDEG_26914Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (131 aa)
BDEG_26538Fcf2 domain-containing protein. (264 aa)
BDEG_25435WD_REPEATS_REGION domain-containing protein. (975 aa)
BDEG_2005240S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (202 aa)
BDEG_20155Uncharacterized protein. (671 aa)
BDEG_20603Uncharacterized protein. (337 aa)
NAT10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1173 aa)
BDEG_20331WD_REPEATS_REGION domain-containing protein. (491 aa)
BDEG_25734Uncharacterized protein. (994 aa)
BDEG_25229Uncharacterized protein. (1115 aa)
BDEG_25371Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (292 aa)
BDEG_25067Sas10 domain-containing protein. (634 aa)
TSR3-2Ribosome biogenesis protein TSR3; Ribosome biogenesis protein required for processing 35S pre- rRNA at site D; Belongs to the TSR3 family. (313 aa)
BDEG_23517NUC153 domain-containing protein. (698 aa)
BDEG_23488WD_REPEATS_REGION domain-containing protein. (560 aa)
BDEG_23031CBF domain-containing protein. (376 aa)
BDEG_23032CBF domain-containing protein. (93 aa)
BDEG_22913WD_REPEATS_REGION domain-containing protein. (647 aa)
BDEG_22349Sm domain-containing protein. (159 aa)
BDEG_22470Uncharacterized protein. (159 aa)
BDEG_22049Bms1-type G domain-containing protein. (820 aa)
BDEG_21533Uncharacterized protein. (1123 aa)
BDEG_21318G domain-containing protein. (518 aa)
BDEG_21190WD_REPEATS_REGION domain-containing protein. (613 aa)
BDEG_21178Kri1_C domain-containing protein. (648 aa)
BDEG_20921WD_REPEATS_REGION domain-containing protein. (899 aa)
Your Current Organism:
Batrachochytrium dendrobatidis JEL423
NCBI taxonomy Id: 403673
Other names: B. dendrobatidis JEL423
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