(38 nodes) Small-subunit processome network (Batrachochytrium dendrobatidis JEL423)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BDEG_22855	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (369 aa)
	BDEG_22913	WD_REPEATS_REGION domain-containing protein. (647 aa)
	BDEG_23032	CBF domain-containing protein. (93 aa)
	BDEG_23031	CBF domain-containing protein. (376 aa)
	BDEG_20331	WD_REPEATS_REGION domain-containing protein. (491 aa)
	BDEG_20155	Uncharacterized protein. (671 aa)
	BDEG_27593	DRIM domain-containing protein. (2834 aa)
	BDEG_27561	rRNA 2'-O-methyltransferase fibrillarin. (329 aa)
	BDEG_27339	Nop domain-containing protein. (502 aa)
	BDEG_28262	WD_REPEATS_REGION domain-containing protein. (773 aa)
	BDEG_28205	WD_REPEATS_REGION domain-containing protein. (580 aa)
	BDEG_27409	WD_REPEATS_REGION domain-containing protein. (499 aa)
	BDEG_27354	Uncharacterized protein. (1956 aa)
	BDEG_23488	WD_REPEATS_REGION domain-containing protein. (560 aa)
	BDEG_23517	NUC153 domain-containing protein. (698 aa)
	BDEG_22851	U3 small nucleolar RNA-associated protein 22. (1256 aa)
	BDEG_24113	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (262 aa)
	BDEG_26920	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (704 aa)
	BDEG_27103	ANAPC4_WD40 domain-containing protein. (866 aa)
	BDEG_27013	S4 RNA-binding domain-containing protein. (182 aa)
	BDEG_26914	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (131 aa)
	BDEG_24841	HAD_SAK_1 domain-containing protein. (526 aa)
	BDEG_24843	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (279 aa)
	BDEG_24861	Uncharacterized protein. (376 aa)
	BDEG_24908	Uncharacterized protein. (289 aa)
	BDEG_24717	Uncharacterized protein. (903 aa)
	BDEG_25067	Sas10 domain-containing protein. (634 aa)
	BDEG_25377	Brix domain-containing protein. (247 aa)
	BDEG_26487	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (3634 aa)
	BDEG_25435	WD_REPEATS_REGION domain-containing protein. (975 aa)
	BDEG_25734	Uncharacterized protein. (994 aa)
	BDEG_25512	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (195 aa)
	BDEG_20725	Nop domain-containing protein. (515 aa)
	BDEG_20642	PINc domain-containing protein. (193 aa)
	BDEG_20921	WD_REPEATS_REGION domain-containing protein. (899 aa)
	BDEG_21533	Uncharacterized protein. (1123 aa)
	BDEG_21190	WD_REPEATS_REGION domain-containing protein. (613 aa)
	BDEG_23062	WD_REPEATS_REGION domain-containing protein. (877 aa)

Your Current Organism:

Batrachochytrium dendrobatidis JEL423

NCBI taxonomy Id: 403673
Other names: B. dendrobatidis JEL423

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDEG_20155	BDEG_20331	A0A177W785	A0A177W8V9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.990
BDEG_20155	BDEG_20642	A0A177W785	A0A177W9L2	Uncharacterized protein.	PINc domain-containing protein.	0.977
BDEG_20155	BDEG_20725	A0A177W785	A0A177W954	Uncharacterized protein.	Nop domain-containing protein.	0.971
BDEG_20155	BDEG_20921	A0A177W785	A0A177WAI8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
BDEG_20155	BDEG_21190	A0A177W785	A0A177WBM2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.995
BDEG_20155	BDEG_21533	A0A177W785	A0A177WDR4	Uncharacterized protein.	Uncharacterized protein.	0.995
BDEG_20155	BDEG_22851	A0A177W785	A0A177WHY2	Uncharacterized protein.	U3 small nucleolar RNA-associated protein 22.	0.998
BDEG_20155	BDEG_22855	A0A177W785	A0A177WGV2	Uncharacterized protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.993
BDEG_20155	BDEG_22913	A0A177W785	A0A177WGX9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.995
BDEG_20155	BDEG_23031	A0A177W785	A0A177WHJ9	Uncharacterized protein.	CBF domain-containing protein.	0.910
BDEG_20155	BDEG_23032	A0A177W785	A0A177WHF6	Uncharacterized protein.	CBF domain-containing protein.	0.910
BDEG_20155	BDEG_23062	A0A177W785	A0A177WGE4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
BDEG_20155	BDEG_23488	A0A177W785	A0A177WHS0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.998
BDEG_20155	BDEG_23517	A0A177W785	A0A177WHU8	Uncharacterized protein.	NUC153 domain-containing protein.	0.990
BDEG_20155	BDEG_24113	A0A177W785	A0A177WJQ9	Uncharacterized protein.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.682
BDEG_20155	BDEG_24717	A0A177W785	A0A177WMN9	Uncharacterized protein.	Uncharacterized protein.	0.992
BDEG_20155	BDEG_24843	A0A177W785	A0A177WM67	Uncharacterized protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.977
BDEG_20155	BDEG_24861	A0A177W785	A0A177WM85	Uncharacterized protein.	Uncharacterized protein.	0.994
BDEG_20155	BDEG_25067	A0A177W785	A0A177WNP6	Uncharacterized protein.	Sas10 domain-containing protein.	0.996
BDEG_20155	BDEG_25377	A0A177W785	A0A177WNZ8	Uncharacterized protein.	Brix domain-containing protein.	0.989