(30 nodes) Catalytic step 2 spliceosome network (Batrachochytrium dendrobatidis JEL423)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BDEG_20106	PPIase cyclophilin-type domain-containing protein. (546 aa)
	BDEG_20273	Sm domain-containing protein. (195 aa)
	BDEG_20418	Uncharacterized protein. (341 aa)
	BDEG_21125	Tr-type G domain-containing protein. (983 aa)
	BDEG_21278	Uncharacterized protein. (671 aa)
	BDEG_21664	WD_REPEATS_REGION domain-containing protein. (221 aa)
	BDEG_22025	Matrin-type domain-containing protein. (251 aa)
	BDEG_22254	Uncharacterized protein. (1583 aa)
	BDEG_22180	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (185 aa)
	BDEG_22349	Sm domain-containing protein. (159 aa)
	BDEG_22859	Uncharacterized protein. (422 aa)
	BDEG_23560	WD_REPEATS_REGION domain-containing protein. (363 aa)
	BDEG_23702	Pre-mRNA-splicing factor syf1. (778 aa)
	BDEG_24776	WD_REPEATS_REGION domain-containing protein. (557 aa)
	BDEG_25057	Uncharacterized protein. (937 aa)
	BDEG_25105	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (112 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (105 aa)
	BDEG_25699	Uncharacterized protein. (353 aa)
	BDEG_25459	C3H1-type domain-containing protein. (308 aa)
	BDEG_26477	Uncharacterized protein. (396 aa)
	BDEG_26130	MI domain-containing protein. (803 aa)
	BDEG_26237	Uncharacterized protein. (204 aa)
	BDEG_27117	Uncharacterized protein. (459 aa)
	BDEG_27118	TPR_REGION domain-containing protein. (184 aa)
	BDEG_27263	Uncharacterized protein. (720 aa)
	BDEG_27704	Pinin_SDK_memA domain-containing protein. (348 aa)
	BDEG_21616	Pinin_SDK_memA domain-containing protein. (348 aa)
	BDEG_28438	Uncharacterized protein. (305 aa)
	BDEG_28451	Uncharacterized protein. (623 aa)
	BDEG_28378	RRM domain-containing protein. (120 aa)

Your Current Organism:

Batrachochytrium dendrobatidis JEL423

NCBI taxonomy Id: 403673
Other names: B. dendrobatidis JEL423

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDEG_20106	BDEG_20273	A0A177W889	A0A177W8W0	PPIase cyclophilin-type domain-containing protein.	Sm domain-containing protein.	0.886
BDEG_20106	BDEG_20418	A0A177W889	A0A177W942	PPIase cyclophilin-type domain-containing protein.	Uncharacterized protein.	0.666
BDEG_20106	BDEG_21125	A0A177W889	A0A177WB91	PPIase cyclophilin-type domain-containing protein.	Tr-type G domain-containing protein.	0.901
BDEG_20106	BDEG_21278	A0A177W889	A0A177WCY6	PPIase cyclophilin-type domain-containing protein.	Uncharacterized protein.	0.582
BDEG_20106	BDEG_22025	A0A177W889	A0A177WD85	PPIase cyclophilin-type domain-containing protein.	Matrin-type domain-containing protein.	0.905
BDEG_20106	BDEG_22180	A0A177W889	A0A177WFT1	PPIase cyclophilin-type domain-containing protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.860
BDEG_20106	BDEG_22254	A0A177W889	A0A177WDX0	PPIase cyclophilin-type domain-containing protein.	Uncharacterized protein.	0.814
BDEG_20106	BDEG_23560	A0A177W889	A0A177WIV7	PPIase cyclophilin-type domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.637
BDEG_20106	BDEG_23702	A0A177W889	A0A177WJM0	PPIase cyclophilin-type domain-containing protein.	Pre-mRNA-splicing factor syf1.	0.947
BDEG_20106	BDEG_24776	A0A177W889	A0A177WMQ4	PPIase cyclophilin-type domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.952
BDEG_20106	BDEG_25057	A0A177W889	A0A177WMX5	PPIase cyclophilin-type domain-containing protein.	Uncharacterized protein.	0.678
BDEG_20106	BDEG_25105	A0A177W889	A0A177WNZ6	PPIase cyclophilin-type domain-containing protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.693
BDEG_20106	BDEG_25459	A0A177W889	A0A177WR93	PPIase cyclophilin-type domain-containing protein.	C3H1-type domain-containing protein.	0.944
BDEG_20106	BDEG_25699	A0A177W889	A0A177WQP1	PPIase cyclophilin-type domain-containing protein.	Uncharacterized protein.	0.807
BDEG_20106	BDEG_26130	A0A177W889	A0A177WTN4	PPIase cyclophilin-type domain-containing protein.	MI domain-containing protein.	0.981
BDEG_20106	BDEG_26237	A0A177W889	A0A177WTX4	PPIase cyclophilin-type domain-containing protein.	Uncharacterized protein.	0.592
BDEG_20106	BDEG_26477	A0A177W889	A0A177WSM1	PPIase cyclophilin-type domain-containing protein.	Uncharacterized protein.	0.601
BDEG_20106	BDEG_27117	A0A177W889	A0A177WUN7	PPIase cyclophilin-type domain-containing protein.	Uncharacterized protein.	0.922
BDEG_20106	BDEG_27118	A0A177W889	A0A177WUN9	PPIase cyclophilin-type domain-containing protein.	TPR_REGION domain-containing protein.	0.922
BDEG_20106	BDEG_27263	A0A177W889	A0A177WVP8	PPIase cyclophilin-type domain-containing protein.	Uncharacterized protein.	0.897