(12 nodes) General transcription initiation factor binding network (Batrachochytrium dendrobatidis JEL423)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BDEG_27930	TFIID_20kDa domain-containing protein. (258 aa)
	BDEG_25463	TFIIB-type domain-containing protein. (335 aa)
	BDEG_20903	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (786 aa)
	BDEG_20820	Myb_DNA-bind_7 domain-containing protein. (752 aa)
	BDEG_22556	TFIID_20kDa domain-containing protein. (1148 aa)
	BDEG_22921	Uncharacterized protein. (2044 aa)
	BDEG_23022	Bromo domain-containing protein. (1244 aa)
	BDEG_23670	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (106 aa)
	BDEG_25246	TFIIB-type domain-containing protein. (483 aa)
	BDEG_26017	Uncharacterized protein. (508 aa)
	BDEG_26639	WD_REPEATS_REGION domain-containing protein. (521 aa)
	BDEG_27909	TIP120 domain-containing protein. (1231 aa)

Your Current Organism:

Batrachochytrium dendrobatidis JEL423

NCBI taxonomy Id: 403673
Other names: B. dendrobatidis JEL423

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDEG_20820	BDEG_22921	A0A177WAN2	A0A177WH81	Myb_DNA-bind_7 domain-containing protein.	Uncharacterized protein.	0.502
BDEG_20820	BDEG_25246	A0A177WAN2	A0A177WPG3	Myb_DNA-bind_7 domain-containing protein.	TFIIB-type domain-containing protein.	0.959
BDEG_20820	BDEG_26017	A0A177WAN2	A0A177WR24	Myb_DNA-bind_7 domain-containing protein.	Uncharacterized protein.	0.959
BDEG_20903	BDEG_22556	A0A177W9J5	A0A177WEV4	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	TFIID_20kDa domain-containing protein.	0.855
BDEG_20903	BDEG_23022	A0A177W9J5	A0A177WHE6	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Bromo domain-containing protein.	0.947
BDEG_20903	BDEG_23670	A0A177W9J5	A0A177WJA2	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.966
BDEG_20903	BDEG_25463	A0A177W9J5	A0A177WQ41	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	TFIIB-type domain-containing protein.	0.987
BDEG_20903	BDEG_27930	A0A177W9J5	A0A177WXA9	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	TFIID_20kDa domain-containing protein.	0.828
BDEG_22556	BDEG_20903	A0A177WEV4	A0A177W9J5	TFIID_20kDa domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.855
BDEG_22556	BDEG_22921	A0A177WEV4	A0A177WH81	TFIID_20kDa domain-containing protein.	Uncharacterized protein.	0.530
BDEG_22556	BDEG_23022	A0A177WEV4	A0A177WHE6	TFIID_20kDa domain-containing protein.	Bromo domain-containing protein.	0.999
BDEG_22556	BDEG_23670	A0A177WEV4	A0A177WJA2	TFIID_20kDa domain-containing protein.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.879
BDEG_22556	BDEG_25463	A0A177WEV4	A0A177WQ41	TFIID_20kDa domain-containing protein.	TFIIB-type domain-containing protein.	0.918
BDEG_22556	BDEG_26639	A0A177WEV4	A0A177WSZ9	TFIID_20kDa domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.839
BDEG_22921	BDEG_20820	A0A177WH81	A0A177WAN2	Uncharacterized protein.	Myb_DNA-bind_7 domain-containing protein.	0.502
BDEG_22921	BDEG_22556	A0A177WH81	A0A177WEV4	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.530
BDEG_22921	BDEG_23022	A0A177WH81	A0A177WHE6	Uncharacterized protein.	Bromo domain-containing protein.	0.468
BDEG_22921	BDEG_25463	A0A177WH81	A0A177WQ41	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.577
BDEG_22921	BDEG_27930	A0A177WH81	A0A177WXA9	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.400
BDEG_23022	BDEG_20903	A0A177WHE6	A0A177W9J5	Bromo domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.947