(14 nodes) Preribosome, small subunit precursor network (Batrachochytrium dendrobatidis JEL423)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BDEG_23032	CBF domain-containing protein. (93 aa)
	BDEG_28648	RRM domain-containing protein. (358 aa)
	BDEG_22274	Uncharacterized protein. (608 aa)
	BDEG_22049	Bms1-type G domain-containing protein. (820 aa)
	BDEG_22470	Uncharacterized protein. (159 aa)
	BDEG_23356	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (563 aa)
	BDEG_23031	CBF domain-containing protein. (376 aa)
	BDEG_24729	Uncharacterized protein. (503 aa)
	BDEG_24116	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (446 aa)
	BDEG_24717	Uncharacterized protein. (903 aa)
	BDEG_24725	RIO domain-containing protein. (531 aa)
	BDEG_26338	Uncharacterized protein. (457 aa)
	BDEG_27593	DRIM domain-containing protein. (2834 aa)
	BDEG_28258	PUM-HD domain-containing protein. (784 aa)

Your Current Organism:

Batrachochytrium dendrobatidis JEL423

NCBI taxonomy Id: 403673
Other names: B. dendrobatidis JEL423

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDEG_22049	BDEG_22274	A0A177WEB7	A0A177WDY9	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.999
BDEG_22049	BDEG_23031	A0A177WEB7	A0A177WHJ9	Bms1-type G domain-containing protein.	CBF domain-containing protein.	0.568
BDEG_22049	BDEG_23032	A0A177WEB7	A0A177WHF6	Bms1-type G domain-containing protein.	CBF domain-containing protein.	0.568
BDEG_22049	BDEG_23356	A0A177WEB7	A0A177WHD0	Bms1-type G domain-containing protein.	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	0.892
BDEG_22049	BDEG_24116	A0A177WEB7	A0A177WLW3	Bms1-type G domain-containing protein.	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	0.999
BDEG_22049	BDEG_24717	A0A177WEB7	A0A177WMN9	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.931
BDEG_22049	BDEG_24725	A0A177WEB7	A0A177WMP6	Bms1-type G domain-containing protein.	RIO domain-containing protein.	0.996
BDEG_22049	BDEG_24729	A0A177WEB7	A0A177WLW0	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.611
BDEG_22049	BDEG_26338	A0A177WEB7	A0A177WU94	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.999
BDEG_22049	BDEG_27593	A0A177WEB7	A0A177WXK2	Bms1-type G domain-containing protein.	DRIM domain-containing protein.	0.608
BDEG_22049	BDEG_28258	A0A177WEB7	A0A177WYA0	Bms1-type G domain-containing protein.	PUM-HD domain-containing protein.	0.743
BDEG_22049	BDEG_28648	A0A177WEB7	A0A177VY60	Bms1-type G domain-containing protein.	RRM domain-containing protein.	0.824
BDEG_22274	BDEG_22049	A0A177WDY9	A0A177WEB7	Uncharacterized protein.	Bms1-type G domain-containing protein.	0.999
BDEG_22274	BDEG_23031	A0A177WDY9	A0A177WHJ9	Uncharacterized protein.	CBF domain-containing protein.	0.620
BDEG_22274	BDEG_23032	A0A177WDY9	A0A177WHF6	Uncharacterized protein.	CBF domain-containing protein.	0.620
BDEG_22274	BDEG_23356	A0A177WDY9	A0A177WHD0	Uncharacterized protein.	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	0.989
BDEG_22274	BDEG_24116	A0A177WDY9	A0A177WLW3	Uncharacterized protein.	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	0.999
BDEG_22274	BDEG_24717	A0A177WDY9	A0A177WMN9	Uncharacterized protein.	Uncharacterized protein.	0.926
BDEG_22274	BDEG_24725	A0A177WDY9	A0A177WMP6	Uncharacterized protein.	RIO domain-containing protein.	0.998
BDEG_22274	BDEG_24729	A0A177WDY9	A0A177WLW0	Uncharacterized protein.	Uncharacterized protein.	0.598