(11 nodes) Catalytic step 2 spliceosome network (Batrachochytrium dendrobatidis JEL423)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BDEG_25459	C3H1-type domain-containing protein. (308 aa)
	BDEG_28451	Uncharacterized protein. (623 aa)
	BDEG_28438	Uncharacterized protein. (305 aa)
	BDEG_27118	TPR_REGION domain-containing protein. (184 aa)
	BDEG_27117	Uncharacterized protein. (459 aa)
	BDEG_26477	Uncharacterized protein. (396 aa)
	BDEG_24776	WD_REPEATS_REGION domain-containing protein. (557 aa)
	BDEG_23702	Pre-mRNA-splicing factor syf1. (778 aa)
	BDEG_21664	WD_REPEATS_REGION domain-containing protein. (221 aa)
	BDEG_21125	Tr-type G domain-containing protein. (983 aa)
	BDEG_20418	Uncharacterized protein. (341 aa)

Your Current Organism:

Batrachochytrium dendrobatidis JEL423

NCBI taxonomy Id: 403673
Other names: B. dendrobatidis JEL423

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDEG_20418	BDEG_21125	A0A177W942	A0A177WB91	Uncharacterized protein.	Tr-type G domain-containing protein.	0.853
BDEG_20418	BDEG_21664	A0A177W942	A0A177WD49	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.505
BDEG_20418	BDEG_23702	A0A177W942	A0A177WJM0	Uncharacterized protein.	Pre-mRNA-splicing factor syf1.	0.999
BDEG_20418	BDEG_24776	A0A177W942	A0A177WMQ4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.891
BDEG_20418	BDEG_25459	A0A177W942	A0A177WR93	Uncharacterized protein.	C3H1-type domain-containing protein.	0.995
BDEG_20418	BDEG_27117	A0A177W942	A0A177WUN7	Uncharacterized protein.	Uncharacterized protein.	0.939
BDEG_20418	BDEG_27118	A0A177W942	A0A177WUN9	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.939
BDEG_20418	BDEG_28438	A0A177W942	A0A177WZE5	Uncharacterized protein.	Uncharacterized protein.	0.620
BDEG_20418	BDEG_28451	A0A177W942	A0A177X0K6	Uncharacterized protein.	Uncharacterized protein.	0.847
BDEG_21125	BDEG_20418	A0A177WB91	A0A177W942	Tr-type G domain-containing protein.	Uncharacterized protein.	0.853
BDEG_21125	BDEG_23702	A0A177WB91	A0A177WJM0	Tr-type G domain-containing protein.	Pre-mRNA-splicing factor syf1.	0.988
BDEG_21125	BDEG_24776	A0A177WB91	A0A177WMQ4	Tr-type G domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.987
BDEG_21125	BDEG_25459	A0A177WB91	A0A177WR93	Tr-type G domain-containing protein.	C3H1-type domain-containing protein.	0.984
BDEG_21125	BDEG_26477	A0A177WB91	A0A177WSM1	Tr-type G domain-containing protein.	Uncharacterized protein.	0.980
BDEG_21125	BDEG_27117	A0A177WB91	A0A177WUN7	Tr-type G domain-containing protein.	Uncharacterized protein.	0.907
BDEG_21125	BDEG_27118	A0A177WB91	A0A177WUN9	Tr-type G domain-containing protein.	TPR_REGION domain-containing protein.	0.907
BDEG_21125	BDEG_28438	A0A177WB91	A0A177WZE5	Tr-type G domain-containing protein.	Uncharacterized protein.	0.646
BDEG_21125	BDEG_28451	A0A177WB91	A0A177X0K6	Tr-type G domain-containing protein.	Uncharacterized protein.	0.622
BDEG_21664	BDEG_20418	A0A177WD49	A0A177W942	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.505
BDEG_21664	BDEG_23702	A0A177WD49	A0A177WJM0	WD_REPEATS_REGION domain-containing protein.	Pre-mRNA-splicing factor syf1.	0.504