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BDEG_23204 BDEG_23204 LSM8 LSM8 BDEG_24419 BDEG_24419 BDEG_22217 BDEG_22217 LSM4 LSM4 BDEG_20273 BDEG_20273 BDEG_28646 BDEG_28646 BDEG_25423 BDEG_25423 LSM3 LSM3 BDEG_25234 BDEG_25234 BDEG_27610 BDEG_27610 BDEG_28152 BDEG_28152 BDEG_27653 BDEG_27653 BDEG_22266 BDEG_22266 BDEG_22349 BDEG_22349
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BDEG_2320426S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. (1003 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
BDEG_24419Small nuclear ribonucleoprotein F. (68 aa)
BDEG_22217Small nuclear ribonucleoprotein Sm D3. (128 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (132 aa)
BDEG_20273Sm domain-containing protein. (195 aa)
BDEG_28646Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (91 aa)
BDEG_25423Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (124 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (105 aa)
BDEG_25234EF-hand domain-containing protein. (1001 aa)
BDEG_27610Uncharacterized protein. (514 aa)
BDEG_28152U6 snRNA-associated Sm-like protein LSm6. (79 aa)
BDEG_27653Small nuclear ribonucleoprotein Sm D2. (115 aa)
BDEG_22266U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
BDEG_22349Sm domain-containing protein. (159 aa)
Your Current Organism:
Batrachochytrium dendrobatidis JEL423
NCBI taxonomy Id: 403673
Other names: B. dendrobatidis JEL423
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