(11 nodes) mRNA decay by 5 to 3 exoribonuclease network (Batrachochytrium dendrobatidis JEL423)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BDEG_28152	U6 snRNA-associated Sm-like protein LSm6. (79 aa)
	BDEG_22266	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	BDEG_22368	Uncharacterized protein. (1011 aa)
	BDEG_22087	Uncharacterized protein. (280 aa)
	BDEG_22349	Sm domain-containing protein. (159 aa)
	BDEG_20622	Nudix hydrolase domain-containing protein. (1062 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (132 aa)
	BDEG_24025	Uncharacterized protein. (167 aa)
	BDEG_24026	PAT1 domain-containing protein. (835 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (105 aa)
	BDEG_27365	ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family. (396 aa)

Your Current Organism:

Batrachochytrium dendrobatidis JEL423

NCBI taxonomy Id: 403673
Other names: B. dendrobatidis JEL423

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDEG_20622	BDEG_22087	A0A177WAN4	A0A177WEG3	Nudix hydrolase domain-containing protein.	Uncharacterized protein.	0.999
BDEG_20622	BDEG_22266	A0A177WAN4	A0A177WDY8	Nudix hydrolase domain-containing protein.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.873
BDEG_20622	BDEG_22349	A0A177WAN4	A0A177WGC1	Nudix hydrolase domain-containing protein.	Sm domain-containing protein.	0.823
BDEG_20622	BDEG_22368	A0A177WAN4	A0A177WEA0	Nudix hydrolase domain-containing protein.	Uncharacterized protein.	0.995
BDEG_20622	BDEG_24025	A0A177WAN4	A0A177WLD6	Nudix hydrolase domain-containing protein.	Uncharacterized protein.	0.954
BDEG_20622	BDEG_24026	A0A177WAN4	A0A177WLK8	Nudix hydrolase domain-containing protein.	PAT1 domain-containing protein.	0.954
BDEG_20622	BDEG_27365	A0A177WAN4	A0A177WWU0	Nudix hydrolase domain-containing protein.	ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family.	0.997
BDEG_20622	BDEG_28152	A0A177WAN4	A0A177WXZ2	Nudix hydrolase domain-containing protein.	U6 snRNA-associated Sm-like protein LSm6.	0.721
BDEG_20622	LSM3	A0A177WAN4	A0A177WQ95	Nudix hydrolase domain-containing protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.878
BDEG_20622	LSM4	A0A177WAN4	A0A177WBK8	Nudix hydrolase domain-containing protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.911
BDEG_22087	BDEG_20622	A0A177WEG3	A0A177WAN4	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.999
BDEG_22087	BDEG_22266	A0A177WEG3	A0A177WDY8	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.840
BDEG_22087	BDEG_22349	A0A177WEG3	A0A177WGC1	Uncharacterized protein.	Sm domain-containing protein.	0.799
BDEG_22087	BDEG_22368	A0A177WEG3	A0A177WEA0	Uncharacterized protein.	Uncharacterized protein.	0.973
BDEG_22087	BDEG_24025	A0A177WEG3	A0A177WLD6	Uncharacterized protein.	Uncharacterized protein.	0.930
BDEG_22087	BDEG_24026	A0A177WEG3	A0A177WLK8	Uncharacterized protein.	PAT1 domain-containing protein.	0.930
BDEG_22087	BDEG_27365	A0A177WEG3	A0A177WWU0	Uncharacterized protein.	ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family.	0.997
BDEG_22087	BDEG_28152	A0A177WEG3	A0A177WXZ2	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm6.	0.706
BDEG_22087	LSM3	A0A177WEG3	A0A177WQ95	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.787
BDEG_22087	LSM4	A0A177WEG3	A0A177WBK8	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.898