(35 nodes) RNA Polymerase I Promoter Clearance network (Batrachochytrium dendrobatidis JEL423)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BDEG_21255	Uncharacterized protein. (672 aa)
	BDEG_20697	SAP30_Sin3_bdg domain-containing protein. (168 aa)
	BDEG_20817	Uncharacterized protein. (823 aa)
	BDEG_20700	Histone H2B; Belongs to the histone H2B family. (208 aa)
	BDEG_21829	Uncharacterized protein. (876 aa)
	BDEG_21805	RNA polymerase Rpb6. (148 aa)
	BDEG_22344	Uncharacterized protein. (751 aa)
	BDEG_21970	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (139 aa)
	BDEG_22688	BTB domain-containing protein. (528 aa)
	BDEG_23146	RNA polymerase Rpb3/RpoA insert domain-containing protein. (348 aa)
	BDEG_22944	DNA-directed RNA polymerase I, II, and III subunit RPABC5. (98 aa)
	BDEG_23650	Cyclin domain-containing protein; Belongs to the cyclin family. (354 aa)
	BDEG_23835	Uncharacterized protein. (858 aa)
	BDEG_23884	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1811 aa)
	BDEG_24664	Cyclin domain-containing protein. (305 aa)
	BDEG_24334	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (424 aa)
	BDEG_24881	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1214 aa)
	BDEG_24658	Cyclin domain-containing protein. (306 aa)
	BDEG_27290	Protein kinase domain-containing protein. (370 aa)
	BDEG_27680	CDK-activating kinase assembly factor MAT1. (256 aa)
	BDEG_28179	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (414 aa)
	BDEG_28157	Uncharacterized protein. (479 aa)
	BDEG_27015	TATA-box-binding protein. (137 aa)
	BDEG_27053	SprT-like domain-containing protein. (190 aa)
	BDEG_26580	Uncharacterized protein. (368 aa)
	BDEG_26308	Uncharacterized protein. (556 aa)
	BDEG_26100	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (132 aa)
	BDEG_25760	Uncharacterized protein. (269 aa)
	BDEG_25670	Ubiquitin. (129 aa)
	BDEG_25434	Uncharacterized protein. (493 aa)
	BDEG_25718	Uncharacterized protein. (397 aa)
	BDEG_25451	RNA polymerase Rpb5 domain-containing protein. (207 aa)
	BDEG_25069	Helicase ATP-binding domain-containing protein. (688 aa)
	BDEG_25167	Uncharacterized protein. (851 aa)
	BDEG_24936	Uncharacterized protein. (78 aa)

Your Current Organism:

Batrachochytrium dendrobatidis JEL423

NCBI taxonomy Id: 403673
Other names: B. dendrobatidis JEL423

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDEG_20697	BDEG_20700	A0A177WA02	A0A177W8W8	SAP30_Sin3_bdg domain-containing protein.	Histone H2B; Belongs to the histone H2B family.	0.764
BDEG_20697	BDEG_20817	A0A177WA02	A0A177W991	SAP30_Sin3_bdg domain-containing protein.	Uncharacterized protein.	0.782
BDEG_20697	BDEG_21255	A0A177WA02	A0A177WAT7	SAP30_Sin3_bdg domain-containing protein.	Uncharacterized protein.	0.699
BDEG_20697	BDEG_21805	A0A177WA02	A0A177WDS4	SAP30_Sin3_bdg domain-containing protein.	RNA polymerase Rpb6.	0.961
BDEG_20697	BDEG_21829	A0A177WA02	A0A177WDJ7	SAP30_Sin3_bdg domain-containing protein.	Uncharacterized protein.	0.782
BDEG_20697	BDEG_21970	A0A177WA02	A0A177WF53	SAP30_Sin3_bdg domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.971
BDEG_20697	BDEG_22344	A0A177WA02	A0A177WF30	SAP30_Sin3_bdg domain-containing protein.	Uncharacterized protein.	0.962
BDEG_20697	BDEG_22688	A0A177WA02	A0A177WG92	SAP30_Sin3_bdg domain-containing protein.	BTB domain-containing protein.	0.799
BDEG_20697	BDEG_22944	A0A177WA02	A0A177WHT8	SAP30_Sin3_bdg domain-containing protein.	DNA-directed RNA polymerase I, II, and III subunit RPABC5.	0.961
BDEG_20697	BDEG_23146	A0A177WA02	A0A177WHK9	SAP30_Sin3_bdg domain-containing protein.	RNA polymerase Rpb3/RpoA insert domain-containing protein.	0.970
BDEG_20697	BDEG_23650	A0A177WA02	A0A177WIE3	SAP30_Sin3_bdg domain-containing protein.	Cyclin domain-containing protein; Belongs to the cyclin family.	0.727
BDEG_20697	BDEG_23835	A0A177WA02	A0A177WJU4	SAP30_Sin3_bdg domain-containing protein.	Uncharacterized protein.	0.799
BDEG_20697	BDEG_23884	A0A177WA02	A0A177WL44	SAP30_Sin3_bdg domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.967
BDEG_20697	BDEG_24334	A0A177WA02	A0A177WLQ6	SAP30_Sin3_bdg domain-containing protein.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.812
BDEG_20697	BDEG_24658	A0A177WA02	A0A177WMC7	SAP30_Sin3_bdg domain-containing protein.	Cyclin domain-containing protein.	0.727
BDEG_20697	BDEG_24664	A0A177WA02	A0A177WLL2	SAP30_Sin3_bdg domain-containing protein.	Cyclin domain-containing protein.	0.727
BDEG_20697	BDEG_24881	A0A177WA02	A0A177WMB0	SAP30_Sin3_bdg domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.962
BDEG_20697	BDEG_24936	A0A177WA02	A0A177WNP7	SAP30_Sin3_bdg domain-containing protein.	Uncharacterized protein.	0.961
BDEG_20697	BDEG_25069	A0A177WA02	A0A177WP89	SAP30_Sin3_bdg domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.752
BDEG_20697	BDEG_25167	A0A177WA02	A0A177WP02	SAP30_Sin3_bdg domain-containing protein.	Uncharacterized protein.	0.782