(55 nodes) Structural constituent of ribosome, and ATPase regulator activity network (Phytophthora infestans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PITG_00523	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (201 aa)
	PITG_01943	60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family. (141 aa)
	PITG_01217	Transmembrane protein, putative. (216 aa)
	PITG_02494	L51_S25_CI-B8 domain-containing protein. (129 aa)
	PITG_03768	50S ribosomal protein L4. (277 aa)
	PITG_03420	50S ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family. (140 aa)
	PITG_04079	Uncharacterized protein. (180 aa)
	PITG_04337	Uncharacterized protein. (119 aa)
	PITG_04382	50S ribosomal protein L27. (131 aa)
	PITG_04391	Uncharacterized protein. (272 aa)
	PITG_05009	Uncharacterized protein. (142 aa)
	PITG_05672	Uncharacterized protein. (513 aa)
	PITG_05673	Uncharacterized protein. (177 aa)
	PITG_06237	60S ribosomal protein L8, putative. (256 aa)
	PITG_06596	Uncharacterized protein; Belongs to the bacterial ribosomal protein bS18 family. (314 aa)
	PITG_06636	Uncharacterized protein. (178 aa)
	PITG_06911	Translation initiation factor IF-2, putative. (573 aa)
	PITG_07300	60S ribosomal protein L35. (123 aa)
	PITG_08548	Uncharacterized protein. (59 aa)
	PITG_09345	40S ribosomal protein S5-2; Belongs to the universal ribosomal protein uS7 family. (196 aa)
	PITG_09453	Uncharacterized protein. (355 aa)
	PITG_09506	30S ribosomal protein S5, putative; Belongs to the universal ribosomal protein uS5 family. (312 aa)
	PITG_09521	Uncharacterized protein. (154 aa)
	PITG_09525	Ribosomal protein L23, putative. (90 aa)
	PITG_09627	Ribosomal protein L23, putative. (90 aa)
	PITG_09631	Uncharacterized protein. (154 aa)
	PITG_08674	Uncharacterized protein. (111 aa)
	PITG_08718	Uncharacterized protein. (205 aa)
	PITG_11045	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (115 aa)
	PITG_11923	Mitochondrial 39-S ribosomal protein L47, putative. (140 aa)
	PITG_11734	50S ribosomal protein L3-2. (285 aa)
	PITG_12193	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (266 aa)
	PITG_12947	40S ribosomal protein S23, putative. (116 aa)
	PITG_12697	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (328 aa)
	PITG_12839	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family. (227 aa)
	PITG_14729	30S ribosomal protein S16, putative. (102 aa)
	PITG_15090	50S ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family. (144 aa)
	PITG_15872	Uncharacterized protein; Belongs to the complex I LYR family. (128 aa)
	PITG_15697	60S ribosomal protein L11, putative; Belongs to the universal ribosomal protein uL5 family. (133 aa)
	PITG_16915	Elongation factor Tu. (182 aa)
	PITG_16757	40S ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	PITG_17607	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. (335 aa)
	PITG_18018	Ribosome-recycling factor, putative. (259 aa)
	PITG_18330	Nudix hydrolase domain-containing protein. (298 aa)
	PITG_18054	50S ribosomal protein L7/L12, putative. (178 aa)
	PITG_19007	Uncharacterized protein. (160 aa)
	PITG_19157	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (92 aa)
	PITG_19038	Uncharacterized protein. (404 aa)
	PITG_19448	50S ribosomal protein L17, putative; Belongs to the bacterial ribosomal protein bL17 family. (146 aa)
	PITG_19999	40S ribosomal protein S14. (150 aa)
	PITG_20116	50S ribosomal protein L15. (250 aa)
	PITG_20798	Ribosomal protein S17, putative. (80 aa)
	PITG_20686	Uncharacterized protein. (90 aa)
	PITG_21503	Uncharacterized protein. (52 aa)
	PITG_22357	RRF domain-containing protein. (109 aa)

Your Current Organism:

Phytophthora infestans

NCBI taxonomy Id: 403677
Other names: P. infestans T30-4, Phytophthora infestans T30-4, Phytophthora infestans strain T30-4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PITG_00523	PITG_01217	D0MR09	D0MUX9	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Transmembrane protein, putative.	0.997
PITG_00523	PITG_01943	D0MR09	D0MUG8	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	0.990
PITG_00523	PITG_02494	D0MR09	D0MWG9	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	L51_S25_CI-B8 domain-containing protein.	0.987
PITG_00523	PITG_03420	D0MR09	D0N078	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	50S ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	0.998
PITG_00523	PITG_03768	D0MR09	D0MYG7	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	50S ribosomal protein L4.	0.996
PITG_00523	PITG_04079	D0MR09	D0N0I1	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein.	0.901
PITG_00523	PITG_04337	D0MR09	D0N116	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein.	0.995
PITG_00523	PITG_04382	D0MR09	D0N152	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	50S ribosomal protein L27.	0.998
PITG_00523	PITG_04391	D0MR09	D0N160	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein.	0.951
PITG_00523	PITG_05009	D0MR09	D0N2K4	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein.	0.984
PITG_00523	PITG_05672	D0MR09	D0N3E5	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein.	0.915
PITG_00523	PITG_05673	D0MR09	D0N3E6	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein.	0.915
PITG_00523	PITG_06237	D0MR09	D0N4E3	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	60S ribosomal protein L8, putative.	0.995
PITG_00523	PITG_06596	D0MR09	D0N578	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bS18 family.	0.951
PITG_00523	PITG_06636	D0MR09	D0N5B1	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein.	0.998
PITG_00523	PITG_06911	D0MR09	D0N6S1	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Translation initiation factor IF-2, putative.	0.894
PITG_00523	PITG_07300	D0MR09	D0N7R5	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	60S ribosomal protein L35.	0.997
PITG_00523	PITG_08548	D0MR09	D0NAW1	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein.	0.982
PITG_00523	PITG_08674	D0MR09	D0NCX0	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein.	0.937
PITG_00523	PITG_08718	D0MR09	D0ND14	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein.	0.960