(15 nodes) Organellar ribosome, and Ribosomal protein L4/L1e network (Phytophthora infestans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PITG_02494	L51_S25_CI-B8 domain-containing protein. (129 aa)
	PITG_03768	50S ribosomal protein L4. (277 aa)
	PITG_04391	Uncharacterized protein. (272 aa)
	PITG_05009	Uncharacterized protein. (142 aa)
	PITG_09345	40S ribosomal protein S5-2; Belongs to the universal ribosomal protein uS7 family. (196 aa)
	PITG_09506	30S ribosomal protein S5, putative; Belongs to the universal ribosomal protein uS5 family. (312 aa)
	PITG_09525	Ribosomal protein L23, putative. (90 aa)
	PITG_09627	Ribosomal protein L23, putative. (90 aa)
	PITG_09631	Uncharacterized protein. (154 aa)
	PITG_08674	Uncharacterized protein. (111 aa)
	PITG_08718	Uncharacterized protein. (205 aa)
	PITG_11923	Mitochondrial 39-S ribosomal protein L47, putative. (140 aa)
	PITG_18330	Nudix hydrolase domain-containing protein. (298 aa)
	PITG_19038	Uncharacterized protein. (404 aa)
	PITG_20686	Uncharacterized protein. (90 aa)

Your Current Organism:

Phytophthora infestans

NCBI taxonomy Id: 403677
Other names: P. infestans T30-4, Phytophthora infestans T30-4, Phytophthora infestans strain T30-4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PITG_02494	PITG_03768	D0MWG9	D0MYG7	L51_S25_CI-B8 domain-containing protein.	50S ribosomal protein L4.	0.986
PITG_02494	PITG_04391	D0MWG9	D0N160	L51_S25_CI-B8 domain-containing protein.	Uncharacterized protein.	0.936
PITG_02494	PITG_05009	D0MWG9	D0N2K4	L51_S25_CI-B8 domain-containing protein.	Uncharacterized protein.	0.991
PITG_02494	PITG_08674	D0MWG9	D0NCX0	L51_S25_CI-B8 domain-containing protein.	Uncharacterized protein.	0.975
PITG_02494	PITG_08718	D0MWG9	D0ND14	L51_S25_CI-B8 domain-containing protein.	Uncharacterized protein.	0.959
PITG_02494	PITG_09345	D0MWG9	D0NBG4	L51_S25_CI-B8 domain-containing protein.	40S ribosomal protein S5-2; Belongs to the universal ribosomal protein uS7 family.	0.972
PITG_02494	PITG_09506	D0MWG9	D0NC61	L51_S25_CI-B8 domain-containing protein.	30S ribosomal protein S5, putative; Belongs to the universal ribosomal protein uS5 family.	0.981
PITG_02494	PITG_09525	D0MWG9	D0NC72	L51_S25_CI-B8 domain-containing protein.	Ribosomal protein L23, putative.	0.913
PITG_02494	PITG_09627	D0MWG9	D0NCF6	L51_S25_CI-B8 domain-containing protein.	Ribosomal protein L23, putative.	0.913
PITG_02494	PITG_09631	D0MWG9	D0NCG0	L51_S25_CI-B8 domain-containing protein.	Uncharacterized protein.	0.961
PITG_02494	PITG_11923	D0MWG9	D0NHJ5	L51_S25_CI-B8 domain-containing protein.	Mitochondrial 39-S ribosomal protein L47, putative.	0.981
PITG_02494	PITG_18330	D0MWG9	D0NXW8	L51_S25_CI-B8 domain-containing protein.	Nudix hydrolase domain-containing protein.	0.993
PITG_02494	PITG_19038	D0MWG9	D0NZU1	L51_S25_CI-B8 domain-containing protein.	Uncharacterized protein.	0.981
PITG_02494	PITG_20686	D0MWG9	D0P2S8	L51_S25_CI-B8 domain-containing protein.	Uncharacterized protein.	0.954
PITG_03768	PITG_02494	D0MYG7	D0MWG9	50S ribosomal protein L4.	L51_S25_CI-B8 domain-containing protein.	0.986
PITG_03768	PITG_04391	D0MYG7	D0N160	50S ribosomal protein L4.	Uncharacterized protein.	0.935
PITG_03768	PITG_05009	D0MYG7	D0N2K4	50S ribosomal protein L4.	Uncharacterized protein.	0.981
PITG_03768	PITG_08674	D0MYG7	D0NCX0	50S ribosomal protein L4.	Uncharacterized protein.	0.950
PITG_03768	PITG_08718	D0MYG7	D0ND14	50S ribosomal protein L4.	Uncharacterized protein.	0.973
PITG_03768	PITG_09345	D0MYG7	D0NBG4	50S ribosomal protein L4.	40S ribosomal protein S5-2; Belongs to the universal ribosomal protein uS7 family.	0.998