(41 nodes) Antioxidant activity network (Phytophthora infestans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PITG_00290	Thioredoxin domain-containing protein. (167 aa)
	PITG_00517	Uncharacterized protein. (457 aa)
	PITG_00518	Nucleoredoxin, putative. (146 aa)
	PITG_00545	Nucleoredoxin, putative. (150 aa)
	PITG_00585	Peroxiredoxin-like protein. (344 aa)
	PITG_00850	Thioredoxin-dependent peroxide reductase, putative. (377 aa)
	PITG_00856	Thioredoxin domain-containing protein. (166 aa)
	PITG_00857	Thioredoxin domain-containing protein. (157 aa)
	PITG_00986	Peroxiredoxin-4. (276 aa)
	PITG_02192	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (298 aa)
	PITG_05505	Uncharacterized protein. (674 aa)
	PITG_07008	Uncharacterized protein. (468 aa)
	PITG_07009	Uncharacterized protein. (284 aa)
	PITG_07010	Uncharacterized protein. (316 aa)
	PITG_07011	Uncharacterized protein. (350 aa)
	PITG_07021	DUF953 domain-containing protein. (367 aa)
	PITG_07048	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (220 aa)
	PITG_07328	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (213 aa)
	PITG_09722	Thioredoxin H-type. (271 aa)
	PITG_11343	Thioredoxin domain-containing protein. (208 aa)
	PITG_11375	Thioredoxin/dynein outer arm protein. (120 aa)
	PITG_13168	Uncharacterized protein. (4284 aa)
	PITG_12541	Uncharacterized protein. (180 aa)
	PITG_12892	Thioredoxin-like protein, putative. (173 aa)
	PITG_13427	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. (463 aa)
	PITG_14083	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. (493 aa)
	PITG_15248	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide. (522 aa)
	PITG_15292	Catalase. (476 aa)
	PITG_14641	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (167 aa)
	PITG_15492	Peroxiredoxin-2. (198 aa)
	PITG_15504	Thioredoxin peroxidase, putative. (208 aa)
	PITG_15626	Superoxide dismutase 2. (155 aa)
	PITG_17834	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (406 aa)
	PITG_18452	Thioredoxin reductase 1; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. (856 aa)
	PITG_18311	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (223 aa)
	PITG_18315	Glutathione peroxidase, putative. (454 aa)
	PITG_18316	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (1103 aa)
	PITG_18317	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (288 aa)
	PITG_19154	Uncharacterized protein. (185 aa)
	PITG_20585	AhpC/TSA family Redoxin, putative. (573 aa)
	PITG_21389	PITH domain-containing protein. (173 aa)

Your Current Organism:

Phytophthora infestans

NCBI taxonomy Id: 403677
Other names: P. infestans T30-4, Phytophthora infestans T30-4, Phytophthora infestans strain T30-4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PITG_00290	PITG_00856	D0MQF3	D0MRU9	Thioredoxin domain-containing protein.	Thioredoxin domain-containing protein.	0.532
PITG_00545	PITG_00856	D0MR29	D0MRU9	Nucleoredoxin, putative.	Thioredoxin domain-containing protein.	0.532
PITG_00585	PITG_15626	D0MR68	D0NT78	Peroxiredoxin-like protein.	Superoxide dismutase 2.	0.491
PITG_00585	PITG_19154	D0MR68	D0NYZ0	Peroxiredoxin-like protein.	Uncharacterized protein.	0.448
PITG_00850	PITG_07048	D0MRU3	D0N747	Thioredoxin-dependent peroxide reductase, putative.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.586
PITG_00850	PITG_07328	D0MRU3	D0N7U0	Thioredoxin-dependent peroxide reductase, putative.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.586
PITG_00850	PITG_13427	D0MRU3	D0NLZ0	Thioredoxin-dependent peroxide reductase, putative.	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	0.400
PITG_00850	PITG_14083	D0MRU3	D0NNL1	Thioredoxin-dependent peroxide reductase, putative.	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	0.400
PITG_00850	PITG_15248	D0MRU3	D0NQ89	Thioredoxin-dependent peroxide reductase, putative.	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.	0.629
PITG_00850	PITG_15292	D0MRU3	D0NQC9	Thioredoxin-dependent peroxide reductase, putative.	Catalase.	0.629
PITG_00850	PITG_15626	D0MRU3	D0NT78	Thioredoxin-dependent peroxide reductase, putative.	Superoxide dismutase 2.	0.527
PITG_00850	PITG_18452	D0MRU3	D0NX20	Thioredoxin-dependent peroxide reductase, putative.	Thioredoxin reductase 1; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	0.447
PITG_00856	PITG_00290	D0MRU9	D0MQF3	Thioredoxin domain-containing protein.	Thioredoxin domain-containing protein.	0.532
PITG_00856	PITG_00545	D0MRU9	D0MR29	Thioredoxin domain-containing protein.	Nucleoredoxin, putative.	0.532
PITG_00986	PITG_07048	D0MS62	D0N747	Peroxiredoxin-4.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.586
PITG_00986	PITG_07328	D0MS62	D0N7U0	Peroxiredoxin-4.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.586
PITG_00986	PITG_13427	D0MS62	D0NLZ0	Peroxiredoxin-4.	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	0.400
PITG_00986	PITG_14083	D0MS62	D0NNL1	Peroxiredoxin-4.	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	0.400
PITG_00986	PITG_15248	D0MS62	D0NQ89	Peroxiredoxin-4.	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.	0.629
PITG_00986	PITG_15292	D0MS62	D0NQC9	Peroxiredoxin-4.	Catalase.	0.629