(32 nodes) Benzoate degradation, and Electron transfer flavoprotein domain network (Geobacter bemidjiensis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Gbem_0543	Short-chain acyl-CoA dehydrogenase. (381 aa)
	Gbem_0630	Thiolase, putative. (534 aa)
	etfB-1	Electron transfer flavoprotein, beta subunit. (270 aa)
	etfA-1	Electron transfer flavoprotein, alpha subunit. (452 aa)
	Gbem_1415	Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (396 aa)
	Gbem_1416	enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (260 aa)
	Gbem_1417	3-hydroxyacyl-CoA dehydrogenase. (288 aa)
	Gbem_1434	Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (398 aa)
	Gbem_1452	glutaryl-CoA dehydrogenase, non-decarboxylating. (385 aa)
	gcdA	glutaconyl-CoA decarboxylase. (585 aa)
	Gbem_1457	enoyl-CoA hydratase/isomerase. (287 aa)
	bamN	Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
	Gbem_1461	3-hydroxyacyl-CoA dehydrogenase. (282 aa)
	Gbem_1462	enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (259 aa)
	etfB-2	Electron transfer flavoprotein, beta subunit. (270 aa)
	etfA-2	Electron transfer flavoprotein, alpha subunit. (447 aa)
	Gbem_1469	Electron transfer flavoprotein, beta subunit. (258 aa)
	Gbem_1470	Electron transfer flavoprotein, alpha subunit. (302 aa)
	etfB-3	Electron transfer flavoprotein, beta subunit. (270 aa)
	etfA-3	Electron transfer flavoprotein, alpha subunit. (442 aa)
	etfB-6	Electron transfer flavoprotein, beta subunit. (270 aa)
	etfA-6	Electron transfer flavoprotein, alpha subunit. (436 aa)
	Gbem_2126	enoyl-CoA hydratase and 3-hydroxyacyl-CoA dehydrogenase. (789 aa)
	Gbem_2127	Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (390 aa)
	fadE	Very-long-chain acyl-CoA dehydrogenase. (592 aa)
	Gbem_2832	Short-chain acyl-CoA dehydrogenase. (379 aa)
	Gbem_2833	enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (260 aa)
	Gbem_2834	3-hydroxyacyl-CoA dehydrogenase. (281 aa)
	Gbem_2835	Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
	Gbem_3574	Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (392 aa)
	Gbem_3575	Short-chain acyl-CoA dehydrogenase. (380 aa)
	Gbem_3576	Short-chain acyl-CoA dehydrogenase. (380 aa)

Your Current Organism:

Geobacter bemidjiensis

NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Gbem_0543	Gbem_0630	Gbem_0543	Gbem_0630	Short-chain acyl-CoA dehydrogenase.	Thiolase, putative.	0.551
Gbem_0543	Gbem_1415	Gbem_0543	Gbem_1415	Short-chain acyl-CoA dehydrogenase.	Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.551
Gbem_0543	Gbem_1416	Gbem_0543	Gbem_1416	Short-chain acyl-CoA dehydrogenase.	enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.701
Gbem_0543	Gbem_1417	Gbem_0543	Gbem_1417	Short-chain acyl-CoA dehydrogenase.	3-hydroxyacyl-CoA dehydrogenase.	0.668
Gbem_0543	Gbem_1434	Gbem_0543	Gbem_1434	Short-chain acyl-CoA dehydrogenase.	Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.558
Gbem_0543	Gbem_1457	Gbem_0543	Gbem_1457	Short-chain acyl-CoA dehydrogenase.	enoyl-CoA hydratase/isomerase.	0.701
Gbem_0543	Gbem_1461	Gbem_0543	Gbem_1461	Short-chain acyl-CoA dehydrogenase.	3-hydroxyacyl-CoA dehydrogenase.	0.655
Gbem_0543	Gbem_1462	Gbem_0543	Gbem_1462	Short-chain acyl-CoA dehydrogenase.	enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.696
Gbem_0543	Gbem_1469	Gbem_0543	Gbem_1469	Short-chain acyl-CoA dehydrogenase.	Electron transfer flavoprotein, beta subunit.	0.698
Gbem_0543	Gbem_1470	Gbem_0543	Gbem_1470	Short-chain acyl-CoA dehydrogenase.	Electron transfer flavoprotein, alpha subunit.	0.776
Gbem_0543	Gbem_2126	Gbem_0543	Gbem_2126	Short-chain acyl-CoA dehydrogenase.	enoyl-CoA hydratase and 3-hydroxyacyl-CoA dehydrogenase.	0.899
Gbem_0543	Gbem_2127	Gbem_0543	Gbem_2127	Short-chain acyl-CoA dehydrogenase.	Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.558
Gbem_0543	Gbem_2833	Gbem_0543	Gbem_2833	Short-chain acyl-CoA dehydrogenase.	enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.695
Gbem_0543	Gbem_2834	Gbem_0543	Gbem_2834	Short-chain acyl-CoA dehydrogenase.	3-hydroxyacyl-CoA dehydrogenase.	0.653
Gbem_0543	Gbem_2835	Gbem_0543	Gbem_2835	Short-chain acyl-CoA dehydrogenase.	Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.571
Gbem_0543	Gbem_3574	Gbem_0543	Gbem_3574	Short-chain acyl-CoA dehydrogenase.	Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.571
Gbem_0543	bamN	Gbem_0543	Gbem_1460	Short-chain acyl-CoA dehydrogenase.	Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.571
Gbem_0543	etfA-1	Gbem_0543	Gbem_1358	Short-chain acyl-CoA dehydrogenase.	Electron transfer flavoprotein, alpha subunit.	0.935
Gbem_0543	etfA-2	Gbem_0543	Gbem_1467	Short-chain acyl-CoA dehydrogenase.	Electron transfer flavoprotein, alpha subunit.	0.935
Gbem_0543	etfA-3	Gbem_0543	Gbem_1501	Short-chain acyl-CoA dehydrogenase.	Electron transfer flavoprotein, alpha subunit.	0.935