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Gbem_0056 Gbem_0056 Gbem_0089 Gbem_0089 Gbem_0161 Gbem_0161 Gbem_0231 Gbem_0231 Gbem_0232 Gbem_0232 ubiX ubiX mqnC-2 mqnC-2 mqnC-1 mqnC-1 Gbem_0271 Gbem_0271 metH metH Gbem_0310 Gbem_0310 metX metX iscR iscR mqnB mqnB mqnD mqnD thiL thiL metF-2 metF-2 Gbem_0614 Gbem_0614 ycgM ycgM yhcC-2 yhcC-2 tenI tenI thiG thiG thiS-1 thiS-1 Gbem_0735 Gbem_0735 metY-1 metY-1 Gbem_1145 Gbem_1145 Gbem_1268 Gbem_1268 metK-1 metK-1 ahcY ahcY mqnA mqnA nifU nifU nifS nifS Gbem_1583 Gbem_1583 cysN-2 cysN-2 cysD-2 cysD-2 cysE-1 cysE-1 cysP cysP Gbem_1724 Gbem_1724 metK-3 metK-3 cysU cysU cysW cysW cysA cysA cysE-2 cysE-2 tusA tusA Gbem_1978 Gbem_1978 Gbem_1979 Gbem_1979 thiF thiF thiS-2 thiS-2 metY-3 metY-3 cysK cysK Gbem_2174 Gbem_2174 metC-1 metC-1 metC-2 metC-2 Gbem_2220 Gbem_2220 cysN-1 cysN-1 cysD-1 cysD-1 apr apr Gbem_2356 Gbem_2356 Gbem_2484 Gbem_2484 Gbem_2656 Gbem_2656 ycbK ycbK rsgA rsgA Gbem_2796 Gbem_2796 Gbem_2963 Gbem_2963 Gbem_2964 Gbem_2964 Gbem_3009 Gbem_3009 Gbem_3061 Gbem_3061 rsgA-2 rsgA-2 cysM cysM Gbem_3167 Gbem_3167 Gbem_3229 Gbem_3229 metK-2 metK-2 metY-2 metY-2 metF-1 metF-1 thiE/thiD thiE/thiD thiC-1 thiC-1 cysS cysS
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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Gbem_0056Pyridoxal-5'-phosphate-dependent enzyme. (385 aa)
Gbem_0089Rhodanese homology domain pair protein. (324 aa)
Gbem_0161Ferredoxin, Rieske superfamily. (100 aa)
Gbem_0231UbiD family decarboxylase; Belongs to the UbiD family. (448 aa)
Gbem_0232Menaquinone biosynthesis polyprenyltransferase, putative; Belongs to the UbiA prenyltransferase family. (289 aa)
ubiXMenaquinone biosynthesis decarboxylase, putative; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (203 aa)
mqnC-2Dehypoxanthinylfutalosine cyclase, putative; Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3-[(1-carboxyvinyl)oxy]benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate. (358 aa)
mqnC-1Dehypoxanthinylfutalosine cyclase, putative; Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2). (357 aa)
Gbem_0271Nitrite/sulfite reductase domain protein. (426 aa)
metH5-methyltetrahydrofolate--homocysteine S-methyltransferase, cobalamin-dependent. (811 aa)
Gbem_0310Rubredoxin and metal-dependent hydrolase domain protein. (238 aa)
metXHomoserine O-acetyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine. (367 aa)
iscRHelix-turn-helix iron-sulfur cluster-binding transcriptional regulator IscR. (152 aa)
mqnBFutalosine hydrolase, putative; Catalyzes the hydrolysis of futalosine (FL) to dehypoxanthine futalosine (DHFL) and hypoxanthine, a step in the biosynthesis of menaquinone (MK, vitamin K2). (243 aa)
mqnD1,4-dihydroxy-6-naphthoate synthase; Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2); Belongs to the MqnA/MqnD family. MqnD subfamily. (288 aa)
thiLThiamin monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family. (324 aa)
metF-2Methionine synthase / methylenetetrahydrofolate reductase(NADPH); 5-methyltetrahydrofolate--homocysteine S-methyltransferase and 5,10-methylenetetrahydrofolate reductase. (610 aa)
Gbem_0614Sulfite reductase, assimilatory; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (234 aa)
ycgMFumarylacetoacetate hydrolase family protein. (218 aa)
yhcC-2Radical SAM domain iron-sulfur cluster-binding oxidoreductase, TIGR01212 family. (318 aa)
tenICarboxythiazole phosphate tautomerase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. (218 aa)
thiGCarboxythiazole phosphate tautomer synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. (260 aa)
thiS-1Thiamin biosynthesis sulfur carrier protein. (75 aa)
Gbem_0735Rubredoxin. (52 aa)
metY-1O-acetyl-L-homoserine sulfhydrylase. (427 aa)
Gbem_1145Membrane protein, major facilitator superfamily. (434 aa)
Gbem_1268Winged helix-turn-helix transcriptional regulator, Rrf2 family. (137 aa)
metK-1ATP--methionine S-adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. (389 aa)
ahcYS-adenosyl-L-homocysteine hydrolase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. (465 aa)
mqnAFutalosine synthase, putative; Catalyzes the dehydration of chorismate into 3-[(1- carboxyvinyl)oxy]benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2). (273 aa)
nifUNitrogen fixation iron-sulfur cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. (284 aa)
nifSNitrogen fixation iron-sulfur cluster assembly cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. (389 aa)
Gbem_1583Acetylene hydratase-related molybdopterin oxidoreductase and desulfurase, putative; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (1139 aa)
cysN-2Sulfate adenylyltransferase, subunit 1. (408 aa)
cysD-2Sulfate adenylyltransferase, subunit 2. (268 aa)
cysE-1Serine O-acetyltransferase. (222 aa)
cysPSulfate ABC transporter, periplasmic sulfate-binding protein. (329 aa)
Gbem_1724Protein of unknown function DUF2292. (51 aa)
metK-3ATP--methionine S-adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. (402 aa)
cysUSulfate ABC transporter, membrane protein CysU; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (276 aa)
cysWSulfate ABC transporter, membrane protein CysW. (293 aa)
cysASulfate ABC transporter, ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. (355 aa)
cysE-2Serine O-acetyltransferase. (175 aa)
tusAtRNA (5-carboxymethylaminomethyl-2-thio-U34) synthesis sulfur carrier protein. (74 aa)
Gbem_1978Sulfite reductase subunit, putative. (314 aa)
Gbem_1979Zinc-dependent isopeptidase. (133 aa)
thiFThiamin biosynthesis thiocarboxylate synthase. (270 aa)
thiS-2Thiamin biosynthesis sulfur carrier protein. (70 aa)
metY-3O-acetyl-L-homoserine sulfhydrylase. (417 aa)
cysKCysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family. (317 aa)
Gbem_2174Rubredoxin reductase. (444 aa)
metC-1Cystathionine gamma-synthase/beta-lyase. (382 aa)
metC-2Cystathionine gamma-synthase/beta-lyase. (377 aa)
Gbem_2220Hypothetical protein. (441 aa)
cysN-1Sulfate adenylyltransferase, subunit 1; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. (551 aa)
cysD-1Sulfate adenylyltransferase, subunit 2. (301 aa)
aprAdenosine-5'-phosphosulfate reductase, glutathione-dependent; Reduction of activated sulfate into sulfite. (230 aa)
Gbem_2356Cytochrome c with three rhodanese homology domains, selenocysteine-containing; 1 heme-binding motif. (459 aa)
Gbem_2484Winged helix-turn-helix transcriptional regulator, Rrf2 family. (153 aa)
Gbem_2656UbiD family decarboxylase; Belongs to the UbiD family. (613 aa)
ycbKProtein of unknown function YcbK. (190 aa)
rsgARibosome small subunit biogenesis GTPase RsgA; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. (355 aa)
Gbem_2796thioredoxin/NifU-like domain protein. (73 aa)
Gbem_2963Rhodanese homology domain superfamily protein. (140 aa)
Gbem_2964Hypothetical protein. (216 aa)
Gbem_3009Metal-dependent hydrolase, subgroup D. (414 aa)
Gbem_3061Winged helix-turn-helix transcriptional regulator, Rrf2 family. (162 aa)
rsgA-2Ribosome small subunit biogenesis GTPase, RsgA-related, putative; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. (307 aa)
cysMCysteine synthase B. (360 aa)
Gbem_3167Glyoxylase-related zinc-dependent hydrolase. (302 aa)
Gbem_3229Electron transfer flavoprotein-associated cytochrome b and CCG domain pair iron-sulfur cluster-binding oxidoreductase. (661 aa)
metK-2ATP--methionine S-adenosyltransferase. (401 aa)
metY-2O-acetyl-L-homoserine sulfhydrylase. (427 aa)
metF-15,10-methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family. (291 aa)
thiE/thiD4-amino-5-hydroxymethyl-2-methylpyrimidine- phosphate kinase and thiamin monophosphate synthase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. (484 aa)
thiC-14-amino-5-hydroxymethyl-2-methylpyrimidine- phosphate synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. (437 aa)
cysScysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (480 aa)
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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