(11 nodes) Methane metabolism network (Geobacter bemidjiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cooF	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF. (189 aa)
	cooS-2	Carbon monoxide dehydrogenase, catalytic subunit. (635 aa)
	sfrB	NADPH oxidoreductase, beta subunit. (670 aa)
	sfrA	NADPH oxidoreductase, alpha subunit. (822 aa)
	Gbem_1223	Hypothetical protein. (186 aa)
	fdnI-2	Periplasmically oriented, membrane-bound formate dehydrogenase, cytochrome b subunit. (204 aa)
	fdnH-2	Periplasmically oriented, membrane-bound formate dehydrogenase, iron-sulfur cluster-binding subunit. (262 aa)
	fdnG-2	Periplasmically oriented, membrane-bound formate dehydrogenase, major subunit, selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (1059 aa)
	cooS-1	Carbon monoxide dehydrogenase, catalytic subunit. (666 aa)
	fdnH-3	Cytoplasmic formate dehydrogenase, iron-sulfur cluster-binding subunit. (264 aa)
	fdnG-3	Cytoplasmic formate dehydrogenase, major subunit, selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (1088 aa)

Your Current Organism:

Geobacter bemidjiensis

NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Gbem_1223	cooF	Gbem_1223	Gbem_0071	Hypothetical protein.	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.	0.900
Gbem_1223	cooS-1	Gbem_1223	Gbem_1736	Hypothetical protein.	Carbon monoxide dehydrogenase, catalytic subunit.	0.900
Gbem_1223	cooS-2	Gbem_1223	Gbem_0072	Hypothetical protein.	Carbon monoxide dehydrogenase, catalytic subunit.	0.900
Gbem_1223	fdnG-2	Gbem_1223	Gbem_1575	Hypothetical protein.	Periplasmically oriented, membrane-bound formate dehydrogenase, major subunit, selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.915
Gbem_1223	fdnG-3	Gbem_1223	Gbem_2181	Hypothetical protein.	Cytoplasmic formate dehydrogenase, major subunit, selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.915
Gbem_1223	fdnH-2	Gbem_1223	Gbem_1574	Hypothetical protein.	Periplasmically oriented, membrane-bound formate dehydrogenase, iron-sulfur cluster-binding subunit.	0.901
Gbem_1223	fdnH-3	Gbem_1223	Gbem_2180	Hypothetical protein.	Cytoplasmic formate dehydrogenase, iron-sulfur cluster-binding subunit.	0.901
Gbem_1223	fdnI-2	Gbem_1223	Gbem_1573	Hypothetical protein.	Periplasmically oriented, membrane-bound formate dehydrogenase, cytochrome b subunit.	0.902
Gbem_1223	sfrA	Gbem_1223	Gbem_0660	Hypothetical protein.	NADPH oxidoreductase, alpha subunit.	0.900
Gbem_1223	sfrB	Gbem_1223	Gbem_0659	Hypothetical protein.	NADPH oxidoreductase, beta subunit.	0.900
cooF	Gbem_1223	Gbem_0071	Gbem_1223	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.	Hypothetical protein.	0.900
cooF	cooS-1	Gbem_0071	Gbem_1736	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.	Carbon monoxide dehydrogenase, catalytic subunit.	0.915
cooF	cooS-2	Gbem_0071	Gbem_0072	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.	Carbon monoxide dehydrogenase, catalytic subunit.	0.980
cooF	fdnG-2	Gbem_0071	Gbem_1575	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.	Periplasmically oriented, membrane-bound formate dehydrogenase, major subunit, selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.888
cooF	fdnG-3	Gbem_0071	Gbem_2181	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.	Cytoplasmic formate dehydrogenase, major subunit, selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.898
cooF	fdnH-2	Gbem_0071	Gbem_1574	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.	Periplasmically oriented, membrane-bound formate dehydrogenase, iron-sulfur cluster-binding subunit.	0.766
cooF	fdnH-3	Gbem_0071	Gbem_2180	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.	Cytoplasmic formate dehydrogenase, iron-sulfur cluster-binding subunit.	0.757
cooF	fdnI-2	Gbem_0071	Gbem_1573	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.	Periplasmically oriented, membrane-bound formate dehydrogenase, cytochrome b subunit.	0.792
cooF	sfrA	Gbem_0071	Gbem_0660	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.	NADPH oxidoreductase, alpha subunit.	0.981
cooF	sfrB	Gbem_0071	Gbem_0659	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.	NADPH oxidoreductase, beta subunit.	0.934