(5 nodes) CO dehydrogenase, alpha-bundle, and 2Fe-2S iron-sulfur cluster binding domain network (Geobacter bemidjiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cooF	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF. (189 aa)
	cooS-2	Carbon monoxide dehydrogenase, catalytic subunit. (635 aa)
	sfrB	NADPH oxidoreductase, beta subunit. (670 aa)
	sfrA	NADPH oxidoreductase, alpha subunit. (822 aa)
	cooS-1	Carbon monoxide dehydrogenase, catalytic subunit. (666 aa)

Your Current Organism:

Geobacter bemidjiensis

NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cooF	cooS-1	Gbem_0071	Gbem_1736	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.	Carbon monoxide dehydrogenase, catalytic subunit.	0.915
cooF	cooS-2	Gbem_0071	Gbem_0072	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.	Carbon monoxide dehydrogenase, catalytic subunit.	0.980
cooF	sfrA	Gbem_0071	Gbem_0660	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.	NADPH oxidoreductase, alpha subunit.	0.981
cooF	sfrB	Gbem_0071	Gbem_0659	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.	NADPH oxidoreductase, beta subunit.	0.934
cooS-1	cooF	Gbem_1736	Gbem_0071	Carbon monoxide dehydrogenase, catalytic subunit.	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.	0.915
cooS-1	cooS-2	Gbem_1736	Gbem_0072	Carbon monoxide dehydrogenase, catalytic subunit.	Carbon monoxide dehydrogenase, catalytic subunit.	0.916
cooS-1	sfrA	Gbem_1736	Gbem_0660	Carbon monoxide dehydrogenase, catalytic subunit.	NADPH oxidoreductase, alpha subunit.	0.914
cooS-1	sfrB	Gbem_1736	Gbem_0659	Carbon monoxide dehydrogenase, catalytic subunit.	NADPH oxidoreductase, beta subunit.	0.914
cooS-2	cooF	Gbem_0072	Gbem_0071	Carbon monoxide dehydrogenase, catalytic subunit.	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.	0.980
cooS-2	cooS-1	Gbem_0072	Gbem_1736	Carbon monoxide dehydrogenase, catalytic subunit.	Carbon monoxide dehydrogenase, catalytic subunit.	0.916
cooS-2	sfrA	Gbem_0072	Gbem_0660	Carbon monoxide dehydrogenase, catalytic subunit.	NADPH oxidoreductase, alpha subunit.	0.914
cooS-2	sfrB	Gbem_0072	Gbem_0659	Carbon monoxide dehydrogenase, catalytic subunit.	NADPH oxidoreductase, beta subunit.	0.914
sfrA	cooF	Gbem_0660	Gbem_0071	NADPH oxidoreductase, alpha subunit.	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.	0.981
sfrA	cooS-1	Gbem_0660	Gbem_1736	NADPH oxidoreductase, alpha subunit.	Carbon monoxide dehydrogenase, catalytic subunit.	0.914
sfrA	cooS-2	Gbem_0660	Gbem_0072	NADPH oxidoreductase, alpha subunit.	Carbon monoxide dehydrogenase, catalytic subunit.	0.914
sfrA	sfrB	Gbem_0660	Gbem_0659	NADPH oxidoreductase, alpha subunit.	NADPH oxidoreductase, beta subunit.	0.997
sfrB	cooF	Gbem_0659	Gbem_0071	NADPH oxidoreductase, beta subunit.	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.	0.934
sfrB	cooS-1	Gbem_0659	Gbem_1736	NADPH oxidoreductase, beta subunit.	Carbon monoxide dehydrogenase, catalytic subunit.	0.914
sfrB	cooS-2	Gbem_0659	Gbem_0072	NADPH oxidoreductase, beta subunit.	Carbon monoxide dehydrogenase, catalytic subunit.	0.914
sfrB	sfrA	Gbem_0659	Gbem_0660	NADPH oxidoreductase, beta subunit.	NADPH oxidoreductase, alpha subunit.	0.997