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frdC frdC hemN hemN Gbem_3575 Gbem_3575 Gbem_4036 Gbem_4036 dapB dapB Gbem_0098 Gbem_0098 Gbem_3576 Gbem_3576 Gbem_3597 Gbem_3597 Gbem_0223 Gbem_0223 Gbem_0353 Gbem_0353 cysG cysG Gbem_0516 Gbem_0516 Gbem_0543 Gbem_0543 Gbem_1452 Gbem_1452 Gbem_1726 Gbem_1726 capL-1 capL-1 capL-2 capL-2 fadE fadE Gbem_2178 Gbem_2178 Gbem_2246 Gbem_2246 pyrD pyrD nifR3 nifR3 fabI fabI Gbem_2826 Gbem_2826 Gbem_2832 Gbem_2832 tyrA tyrA frdB frdB frdA frdA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
frdCSuccinate dehydrogenase/fumarate reductase, cytochrome b558 subunit. (221 aa)
hemNOxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. (381 aa)
Gbem_3575Short-chain acyl-CoA dehydrogenase. (380 aa)
Gbem_4036Flavocytochrome c; 4 heme-binding sites; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (598 aa)
dapBDihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate. (267 aa)
Gbem_0098tRNA dihydrouridine synthase-like flavin mononucleotide-binding domain protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (341 aa)
Gbem_3576Short-chain acyl-CoA dehydrogenase. (380 aa)
Gbem_3597Flavocytochrome c; 4 heme-binding sites; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (591 aa)
Gbem_0223Pyridoxamine-5'-phosphate oxidase-related FMN-binding protein. (123 aa)
Gbem_0353Hypothetical protein. (123 aa)
cysGPrecorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase, putative. (224 aa)
Gbem_0516Pyridoxamine-5'-phosphate oxidase-related FMN-binding protein. (163 aa)
Gbem_0543Short-chain acyl-CoA dehydrogenase. (381 aa)
Gbem_1452glutaryl-CoA dehydrogenase, non-decarboxylating. (385 aa)
Gbem_1726Hypothetical protein. (160 aa)
capL-1UDP-N-acetyl-D-galactosamine 6-dehydrogenase, putative; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (428 aa)
capL-2UDP-N-acetyl-D-galactosamine 6-dehydrogenase, putative; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (449 aa)
fadEVery-long-chain acyl-CoA dehydrogenase. (592 aa)
Gbem_2178Pyridoxamine-5'-phosphate oxidase-related FMN-binding protein. (123 aa)
Gbem_2246Pyridoxamine-5'-phosphate oxidase-related FMN-binding protein. (131 aa)
pyrDDihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with NAD(+) as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily. (305 aa)
nifR3TIM barrel oxidoreductase NifR3; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (321 aa)
fabIEnoyl-(acyl carrier protein) reductase. (256 aa)
Gbem_2826Short-chain acyl-CoA dehydrogenase. (385 aa)
Gbem_2832Short-chain acyl-CoA dehydrogenase. (379 aa)
tyrAPrephenate dehydrogenase. (286 aa)
frdBSuccinate dehydrogenase/fumarate reductase, iron-sulfur protein. (246 aa)
frdASuccinate dehydrogenase/fumarate reductase, flavoprotein subunit. (637 aa)
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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