STRINGSTRING
hemE hemE Gbem_0226 Gbem_0226 Gbem_0231 Gbem_0231 Gbem_0303 Gbem_0303 mqnD mqnD tal tal pckA-2 pckA-2 pckA pckA prt prt uge uge Gbem_1007 Gbem_1007 maeB-1 maeB-1 moaA-1 moaA-1 moaA-2 moaA-2 maeB-2 maeB-2 Gbem_1458 Gbem_1458 coaBC coaBC Gbem_1683 Gbem_1683 Gbem_1862 Gbem_1862 maeB-3 maeB-3 trpC trpC moaA-3 moaA-3 uxs uxs trpE trpE Gbem_2656 Gbem_2656 psd psd tabA tabA pyrF pyrF speA speA nspC nspC arnA arnA panD panD ribA-1 ribA-1 Gbem_3032 Gbem_3032 thiC-1 thiC-1 cobD cobD cbiB cbiB aroG-2 aroG-2 Gbem_3722 Gbem_3722 Gbem_3725 Gbem_3725 citF citF lysA lysA
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
hemEUroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. (339 aa)
Gbem_0226Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle. (911 aa)
Gbem_0231UbiD family decarboxylase; Belongs to the UbiD family. (448 aa)
Gbem_0303Metal-dependent hydrolase superfamily protein. (334 aa)
mqnD1,4-dihydroxy-6-naphthoate synthase; Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2); Belongs to the MqnA/MqnD family. MqnD subfamily. (288 aa)
talTransaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily. (214 aa)
pckA-2Phosphoenolpyruvate carboxykinase, ATP-dependent; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. (537 aa)
pckAPhosphoenolpyruvate carboxykinase, GTP-dependent; Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle; Belongs to the phosphoenolpyruvate carboxykinase [GTP] family. (647 aa)
prtCDP-paratose synthase. (303 aa)
ugeUDP-galacturonate 4-epimerase. (336 aa)
Gbem_1007Ketose-1,6-bisphosphate aldolase, class II, putative. (427 aa)
maeB-1Malate oxidoreductase, NADP-dependent, phosphate acetyltransferase-like domain-containing. (749 aa)
moaA-1Pyranopterin triphosphate synthase; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate. (326 aa)
moaA-2Pyranopterin triphosphate synthase; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate. (326 aa)
maeB-2Malate oxidoreductase, NADP-dependent, phosphate acetyltransferase-like domain-containing. (779 aa)
Gbem_1458Amidohydrolase, putative. (300 aa)
coaBCPhosphopantothenylcysteine decarboxylase and phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. (411 aa)
Gbem_1683NAD-dependent nucleoside diphosphate-sugar epimerase/dehydratase. (373 aa)
Gbem_1862Phosphatidylserine decarboxylase, putative; Belongs to the phosphatidylserine decarboxylase family. (335 aa)
maeB-3Malate oxidoreductase, NADP-dependent, phosphate acetyltransferase-like domain-containing. (749 aa)
trpCIndole-3-glycerol-phosphate synthase; Belongs to the TrpC family. (266 aa)
moaA-3Pyranopterin triphosphate synthase; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate. (326 aa)
uxsUDP-glucuronate decarboxylase. (311 aa)
trpEAnthranilate synthase, catalytic subunit; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high c [...] (491 aa)
Gbem_2656UbiD family decarboxylase; Belongs to the UbiD family. (613 aa)
psdPhosphatidylserine decarboxylase, putative; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). (219 aa)
tabAOrnithine/diaminopimelate/arginine decarboxylase-related protein TabA. (421 aa)
pyrFOrotidine-5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. (240 aa)
speAArginine decarboxylase, biosynthetic type; Catalyzes the biosynthesis of agmatine from arginine. (635 aa)
nspCCarboxynorspermidine/carboxyspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily. (384 aa)
arnAUDP-glucuronate 4-dehydrogenase, decarboxylating. (346 aa)
panDAspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine. (134 aa)
ribA-13,4-dihydroxy-2-butanone-4-phosphate synthase and GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. (400 aa)
Gbem_3032Protein of unknown function DUF3793. (247 aa)
thiC-14-amino-5-hydroxymethyl-2-methylpyrimidine- phosphate synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. (437 aa)
cobDL-threonine-0-3-phosphate decarboxylase. (408 aa)
cbiBAdenosylcobinamide-phosphate synthase; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. (319 aa)
aroG-23-deoxy-D-arabino-heptulosonate 7-phosphate synthase. (341 aa)
Gbem_3722NAD-dependent nucleoside diphosphate-sugar epimerase/dehydratase. (327 aa)
Gbem_3725NAD-dependent nucleoside diphosphate-sugar epimerase/dehydratase. (288 aa)
citFCitrate lyase, alpha subunit. (512 aa)
lysADiaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (417 aa)
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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