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Gbem_3785 Gbem_3785 Gbem_0140 Gbem_0140 ubiX ubiX Gbem_0266 Gbem_0266 Gbem_0327 Gbem_0327 nfo nfo Gbem_0373 Gbem_0373 hemA hemA bkdA bkdA Gbem_0721 Gbem_0721 Gbem_0736 Gbem_0736 miaA-1 miaA-1 Gbem_0993 Gbem_0993 Gbem_1199 Gbem_1199 queD queD Gbem_1417 Gbem_1417 Gbem_1461 Gbem_1461 Gbem_1585 Gbem_1585 miaA-2 miaA-2 Gbem_1653 Gbem_1653 Gbem_1731 Gbem_1731 epsH epsH epsI epsI Gbem_2034 Gbem_2034 nifH nifH draG draG aag aag pdhA pdhA Gbem_2295 Gbem_2295 Gbem_2377 Gbem_2377 ribF ribF ispE ispE Gbem_2787 Gbem_2787 Gbem_2793 Gbem_2793 mutS-2 mutS-2 Gbem_2834 Gbem_2834 hrpB hrpB Gbem_3202 Gbem_3202 Gbem_3306 Gbem_3306 cbiX cbiX thyX thyX nadD nadD
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
Gbem_3785Hypothetical protein. (156 aa)
Gbem_0140DUF2892 and SRPBCC_8 domain protein. (242 aa)
ubiXMenaquinone biosynthesis decarboxylase, putative; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (203 aa)
Gbem_0266EVE domain protein. (154 aa)
Gbem_0327Metal-dependent phosphohydrolase-related protein. (425 aa)
nfoEndodeoxyribonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic (AP) sites, generating a 3'-hydroxyl group and a 5'-terminal sugar phosphate. (283 aa)
Gbem_0373Protein of unknown function DUF77. (98 aa)
hemAglutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). (434 aa)
bkdABranched-chain 2-oxoacid dehydrogenase complex, E1 protein, alpha subunit, putative; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). (351 aa)
Gbem_0721Protein of unknown function DUF833. (258 aa)
Gbem_0736Aspartate/glutamate/phosphoserine/alanine/cystea te aminotransferase, putative. (356 aa)
miaA-1tRNA (N6-dimethylallyl-A37)-dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (306 aa)
Gbem_0993Hypothetical protein. (163 aa)
Gbem_1199NADP oxidoreductase, coenzyme F420-dependent. (212 aa)
queD6-carboxy-5,6,7,8-tetrahydropterin synthase. (122 aa)
Gbem_14173-hydroxyacyl-CoA dehydrogenase. (288 aa)
Gbem_14613-hydroxyacyl-CoA dehydrogenase. (282 aa)
Gbem_1585Lipoprotein cytochrome c, 1 heme-binding site. (134 aa)
miaA-2tRNA (N6-dimethylallyl-A37)-dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (306 aa)
Gbem_1653AMMECR1 family protein. (183 aa)
Gbem_1731Iron-sulfur cluster-binding ATPase, NifH/FrxC family. (274 aa)
epsHExopolysaccharide synthesis membrane protein H (exosortase). (281 aa)
epsIExopolysaccharide synthesis periplasmic protein I. (208 aa)
Gbem_2034ADP-ribosyl-glycohydrolase superfamily protein. (273 aa)
nifHNitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family. (289 aa)
draGADP-ribosyl-(nitrogenase)-activating glycohydrolase. (301 aa)
aag3-methyladenine-DNA glycosylase; Belongs to the DNA glycosylase MPG family. (186 aa)
pdhAPyruvate dehydrogenase complex, E1 protein, alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (325 aa)
Gbem_2295MEMO-like protein; Belongs to the MEMO1 family. (266 aa)
Gbem_2377SAM-dependent methyltransferase, type 11. (190 aa)
ribFRiboflavin kinase and FAD synthetase; Belongs to the ribF family. (323 aa)
ispE4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. (280 aa)
Gbem_2787Antitoxin, XRE family. (99 aa)
Gbem_2793Protein of unknown function DUF185. (386 aa)
mutS-2DNA mismatch repair ATPase MutS-2; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (783 aa)
Gbem_28343-hydroxyacyl-CoA dehydrogenase. (281 aa)
hrpBATP-dependent helicase HrpB. (827 aa)
Gbem_3202Radical SAM domain iron-sulfur cluster-binding oxidoreductase. (342 aa)
Gbem_3306SAM-dependent methyltransferase, type 11. (249 aa)
cbiXSirohydrochlorin cobaltochelatase. (127 aa)
thyXThymidylate synthase, FAD-dependent; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant. (229 aa)
nadDNicotinate/nicotinamide mononucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (216 aa)
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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