STRINGSTRING
Gbem_3574 Gbem_3574 tdh tdh Gbem_0288 Gbem_0288 Gbem_0289 Gbem_0289 dtd dtd Gbem_0392 Gbem_0392 gcvT gcvT gcvH gcvH Gbem_3730 Gbem_3730 gcvP1 gcvP1 gcvP2 gcvP2 Gbem_0520 Gbem_0520 Gbem_0630 Gbem_0630 ycgM ycgM Gbem_0697 Gbem_0697 pckA pckA Gbem_0785 Gbem_0785 ald ald Gbem_1412 Gbem_1412 Gbem_1415 Gbem_1415 Gbem_1434 Gbem_1434 bamN bamN larG larG coaBC coaBC Gbem_1793 Gbem_1793 Gbem_2022 Gbem_2022 yjiL yjiL Gbem_2126 Gbem_2126 Gbem_2127 Gbem_2127 Gbem_2174 Gbem_2174 paaK-1 paaK-1 paaK-2 paaK-2 yjeK yjeK putA putA slyX slyX Gbem_2614 Gbem_2614 hinT hinT Gbem_2777 Gbem_2777 Gbem_2835 Gbem_2835 speA speA Gbem_3555 Gbem_3555
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Gbem_3574Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (392 aa)
tdhL-threonine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family. (347 aa)
Gbem_0288Enolase superfamily protein. (284 aa)
Gbem_0289FAD-dependent oxidase. (976 aa)
dtdD-aminoacyl-tRNA deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (149 aa)
Gbem_0392(R)-2-hydroxyacyl-CoA dehydratase-radicalizing ATPase. (256 aa)
gcvTGlycine cleavage system T protein. (363 aa)
gcvHGlycine cleavage system lipoyl carrier protein GcvH; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. (123 aa)
Gbem_3730N-acetylglycoside deacetylase, LmbE family. (209 aa)
gcvP1Glycine cleavage system P protein, subunit 1; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. (445 aa)
gcvP2Glycine cleavage system P protein, subunit 2. (479 aa)
Gbem_0520Amidohydrolase, YtcJ-related protein. (602 aa)
Gbem_0630Thiolase, putative. (534 aa)
ycgMFumarylacetoacetate hydrolase family protein. (218 aa)
Gbem_0697PDC hydrolase-related protein. (268 aa)
pckAPhosphoenolpyruvate carboxykinase, GTP-dependent; Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle; Belongs to the phosphoenolpyruvate carboxykinase [GTP] family. (647 aa)
Gbem_0785Metal-dependent hydrolase, beta-lactamase superfamily. (368 aa)
aldAlanine dehydrogenase; Belongs to the AlaDH/PNT family. (371 aa)
Gbem_1412(R)-2-hydroxyacyl-CoA dehydratase-radicalizing ATPase. (272 aa)
Gbem_1415Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (396 aa)
Gbem_1434Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (398 aa)
bamNThiolase; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
larGLipoyl carrier protein LarG; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. (129 aa)
coaBCPhosphopantothenylcysteine decarboxylase and phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. (411 aa)
Gbem_1793Adenylyltransferase, putative. (441 aa)
Gbem_2022(S)-2-hydroxyglutarate dehydrogenase, putative. (399 aa)
yjiL(R)-2-hydroxyacyl-CoA dehydratase-radicalizing ATPase YjiL. (256 aa)
Gbem_2126enoyl-CoA hydratase and 3-hydroxyacyl-CoA dehydrogenase. (789 aa)
Gbem_2127Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (390 aa)
Gbem_2174Rubredoxin reductase. (444 aa)
paaK-1Phenylacetate--coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA). (433 aa)
paaK-2Phenylacetate--coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA). (434 aa)
yjeKTranslation elongation factor P-lysyl-lysine 2,3-aminomutase. (344 aa)
putAProline dehydrogenase and Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. (1004 aa)
slyXUncharacterized protein SlyX. (67 aa)
Gbem_2614Adenylyltransferase, putative. (460 aa)
hinTPurine nucleoside phosphoramidase. (114 aa)
Gbem_2777Glu/Leu/Phe/Val dehydrogenase superfamily protein. (986 aa)
Gbem_2835Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
speAArginine decarboxylase, biosynthetic type; Catalyzes the biosynthesis of agmatine from arginine. (635 aa)
Gbem_3555Cyclase/hydrolase, putative. (226 aa)
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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