(14 nodes) Selenocompound metabolism network (Geobacter bemidjiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	Gbem_0056	Pyridoxal-5'-phosphate-dependent enzyme. (385 aa)
	metH	5-methyltetrahydrofolate--homocysteine S-methyltransferase, cobalamin-dependent. (811 aa)
	metF-2	Methionine synthase / methylenetetrahydrofolate reductase(NADPH); 5-methyltetrahydrofolate--homocysteine S-methyltransferase and 5,10-methylenetetrahydrofolate reductase. (610 aa)
	cysN-2	Sulfate adenylyltransferase, subunit 1. (408 aa)
	cysD-2	Sulfate adenylyltransferase, subunit 2. (268 aa)
	metC-1	Cystathionine gamma-synthase/beta-lyase. (382 aa)
	metC-2	Cystathionine gamma-synthase/beta-lyase. (377 aa)
	Gbem_2291	Cysteine desulfurase family protein. (380 aa)
	cysN-1	Sulfate adenylyltransferase, subunit 1; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. (551 aa)
	cysD-1	Sulfate adenylyltransferase, subunit 2. (301 aa)
	metG	methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. (509 aa)
	selD	Selenide, water dikinase, selenocysteine-containing; Synthesizes selenophosphate from selenide and ATP. (343 aa)
	trxB	Thioredoxin reductase. (316 aa)
	selA	L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. (468 aa)

Your Current Organism:

Geobacter bemidjiensis

NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Gbem_0056	metC-1	Gbem_0056	Gbem_2218	Pyridoxal-5'-phosphate-dependent enzyme.	Cystathionine gamma-synthase/beta-lyase.	0.949
Gbem_0056	metC-2	Gbem_0056	Gbem_2219	Pyridoxal-5'-phosphate-dependent enzyme.	Cystathionine gamma-synthase/beta-lyase.	0.948
Gbem_0056	metF-2	Gbem_0056	Gbem_0613	Pyridoxal-5'-phosphate-dependent enzyme.	Methionine synthase / methylenetetrahydrofolate reductase(NADPH); 5-methyltetrahydrofolate--homocysteine S-methyltransferase and 5,10-methylenetetrahydrofolate reductase.	0.921
Gbem_0056	metH	Gbem_0056	Gbem_0277	Pyridoxal-5'-phosphate-dependent enzyme.	5-methyltetrahydrofolate--homocysteine S-methyltransferase, cobalamin-dependent.	0.919
Gbem_2291	metC-1	Gbem_2291	Gbem_2218	Cysteine desulfurase family protein.	Cystathionine gamma-synthase/beta-lyase.	0.907
Gbem_2291	selA	Gbem_2291	Gbem_3796	Cysteine desulfurase family protein.	L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.	0.439
Gbem_2291	selD	Gbem_2291	Gbem_3460	Cysteine desulfurase family protein.	Selenide, water dikinase, selenocysteine-containing; Synthesizes selenophosphate from selenide and ATP.	0.952
Gbem_2291	trxB	Gbem_2291	Gbem_3686	Cysteine desulfurase family protein.	Thioredoxin reductase.	0.925
cysD-1	cysD-2	Gbem_2353	Gbem_1630	Sulfate adenylyltransferase, subunit 2.	Sulfate adenylyltransferase, subunit 2.	0.909
cysD-1	cysN-1	Gbem_2353	Gbem_2352	Sulfate adenylyltransferase, subunit 2.	Sulfate adenylyltransferase, subunit 1; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.	0.999
cysD-1	cysN-2	Gbem_2353	Gbem_1629	Sulfate adenylyltransferase, subunit 2.	Sulfate adenylyltransferase, subunit 1.	0.999
cysD-1	metF-2	Gbem_2353	Gbem_0613	Sulfate adenylyltransferase, subunit 2.	Methionine synthase / methylenetetrahydrofolate reductase(NADPH); 5-methyltetrahydrofolate--homocysteine S-methyltransferase and 5,10-methylenetetrahydrofolate reductase.	0.419
cysD-2	cysD-1	Gbem_1630	Gbem_2353	Sulfate adenylyltransferase, subunit 2.	Sulfate adenylyltransferase, subunit 2.	0.909
cysD-2	cysN-1	Gbem_1630	Gbem_2352	Sulfate adenylyltransferase, subunit 2.	Sulfate adenylyltransferase, subunit 1; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.	0.999
cysD-2	cysN-2	Gbem_1630	Gbem_1629	Sulfate adenylyltransferase, subunit 2.	Sulfate adenylyltransferase, subunit 1.	0.999
cysD-2	metF-2	Gbem_1630	Gbem_0613	Sulfate adenylyltransferase, subunit 2.	Methionine synthase / methylenetetrahydrofolate reductase(NADPH); 5-methyltetrahydrofolate--homocysteine S-methyltransferase and 5,10-methylenetetrahydrofolate reductase.	0.419
cysN-1	cysD-1	Gbem_2352	Gbem_2353	Sulfate adenylyltransferase, subunit 1; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.	Sulfate adenylyltransferase, subunit 2.	0.999
cysN-1	cysD-2	Gbem_2352	Gbem_1630	Sulfate adenylyltransferase, subunit 1; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.	Sulfate adenylyltransferase, subunit 2.	0.999
cysN-1	cysN-2	Gbem_2352	Gbem_1629	Sulfate adenylyltransferase, subunit 1; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.	Sulfate adenylyltransferase, subunit 1.	0.996
cysN-1	metC-1	Gbem_2352	Gbem_2218	Sulfate adenylyltransferase, subunit 1; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.	Cystathionine gamma-synthase/beta-lyase.	0.616