STRINGSTRING
por-1 por-1 Gbem_0226 Gbem_0226 pyc pyc Gbem_0287 Gbem_0287 ackA-2 ackA-2 bkdA bkdA bkdB bkdB bkdF bkdF larA larA Gbem_0629 Gbem_0629 ppdK ppdK lpdA-1 lpdA-1 pckA-2 pckA-2 pckA pckA fumB fumB Gbem_0982 Gbem_0982 pyk pyk cimA cimA maeB-1 maeB-1 Gbem_1414 Gbem_1414 oadA oadA maeB-2 maeB-2 bamN bamN accB accB accC accC ycbL ycbL maeB-3 maeB-3 nifV nifV aceF aceF pdhB pdhB pdhA pdhA pta pta ackA-1 ackA-1 leuA leuA Gbem_2835 Gbem_2835 korB korB korA korA mdh mdh vorB vorB vorA vorA accA accA accD accD Gbem_3384 Gbem_3384 Gbem_3574 Gbem_3574 Gbem_3597 Gbem_3597 por-2 por-2 Gbem_4036 Gbem_4036 Gbem_4048 Gbem_4048
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
por-1Pyruvate:ferredoxin/flavodoxin oxidoreductase. (1183 aa)
Gbem_0226Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle. (911 aa)
pycPyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1148 aa)
Gbem_02872-oxoacid decarboxylase/dehydrogenase, putative; Belongs to the TPP enzyme family. (597 aa)
ackA-2Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (409 aa)
bkdABranched-chain 2-oxoacid dehydrogenase complex, E1 protein, alpha subunit, putative; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). (351 aa)
bkdBBranched-chain 2-oxoacid dehydrogenase complex, E1 protein, beta subunit, putative. (320 aa)
bkdFDihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; Branched-chain 2-oxoacid dehydrogenase complex, E2 protein, dihydrolipoamide acyltransferase, putative. (406 aa)
larALactate racemase. (427 aa)
Gbem_0629Glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein. (117 aa)
ppdKPyruvate phosphate dikinase; Belongs to the PEP-utilizing enzyme family. (914 aa)
lpdA-1Dihydrolipoamide dehydrogenase. (470 aa)
pckA-2Phosphoenolpyruvate carboxykinase, ATP-dependent; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. (537 aa)
pckAPhosphoenolpyruvate carboxykinase, GTP-dependent; Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle; Belongs to the phosphoenolpyruvate carboxykinase [GTP] family. (647 aa)
fumBFumarate hydratase, class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. (541 aa)
Gbem_0982BioD and DRTGG domain protein. (364 aa)
pykPyruvate kinase; Belongs to the pyruvate kinase family. (481 aa)
cimACitramalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. (528 aa)
maeB-1Malate oxidoreductase, NADP-dependent, phosphate acetyltransferase-like domain-containing. (749 aa)
Gbem_1414acyl-CoA synthetase, ADP-forming. (697 aa)
oadAOxaloacetate decarboxylase. (690 aa)
maeB-2Malate oxidoreductase, NADP-dependent, phosphate acetyltransferase-like domain-containing. (779 aa)
bamNThiolase; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
accBacetyl-CoA carboxylase, biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (156 aa)
accCacetyl-CoA carboxylase, biotin carboxylase component; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (446 aa)
ycbLZinc-dependent hydrolase YcbL. (209 aa)
maeB-3Malate oxidoreductase, NADP-dependent, phosphate acetyltransferase-like domain-containing. (749 aa)
nifVHomocitrate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. (382 aa)
aceFPyruvate dehydrogenase complex, E2 protein, dihydrolipoamide acetyltransferase. (480 aa)
pdhBPyruvate dehydrogenase complex, E1 protein, beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. (328 aa)
pdhAPyruvate dehydrogenase complex, E1 protein, alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (325 aa)
ptaPhosphate acetyltransferase. (333 aa)
ackA-1Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (421 aa)
leuA2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily. (515 aa)
Gbem_2835Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
korB2-oxoglutarate:ferredoxin oxidoreductase, thiamin diphosphate-binding subunit. (270 aa)
korA2-oxoglutarate:ferredoxin oxidoreductase, alpha subunit. (377 aa)
mdhMalate dehydrogenase, NAD-dependent; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. (317 aa)
vorB2-oxoacid:ferredoxin oxidoreductase, thiamin diphosphate-binding subunit. (246 aa)
vorA2-oxoacid:ferredoxin oxidoreductase, alpha subunit. (368 aa)
accAacetyl-CoA carboxylase, carboxyl transferase, alpha subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (319 aa)
accDacetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (282 aa)
Gbem_3384Acylphosphatase. (94 aa)
Gbem_3574Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (392 aa)
Gbem_3597Flavocytochrome c; 4 heme-binding sites; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (591 aa)
por-2Pyruvate:ferredoxin/flavodoxin oxidoreductase. (1238 aa)
Gbem_4036Flavocytochrome c; 4 heme-binding sites; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (598 aa)
Gbem_4048BioD and DRTGG domain protein. (370 aa)
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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