(8 nodes) Nitrotoluene degradation network (Geobacter bemidjiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cooF	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF. (189 aa)
	cooS-2	Carbon monoxide dehydrogenase, catalytic subunit. (635 aa)
	Gbem_0313	Iron-sulfur cluster-binding oxidoreductase. (241 aa)
	hycL	Periplasmically oriented, membrane-bound [NiFe]-hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. (571 aa)
	hycS	Periplasmically oriented, membrane-bound [NiFe]-hydrogenase, small subunit. (391 aa)
	cooS-1	Carbon monoxide dehydrogenase, catalytic subunit. (666 aa)
	hybL	Periplasmically oriented, membrane-bound [NiFe]-hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. (559 aa)
	hybS	Periplasmically oriented, membrane-bound [NiFe]-hydrogenase, small subunit. (368 aa)

Your Current Organism:

Geobacter bemidjiensis

NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Gbem_0313	cooF	Gbem_0313	Gbem_0071	Iron-sulfur cluster-binding oxidoreductase.	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.	0.933
Gbem_0313	cooS-1	Gbem_0313	Gbem_1736	Iron-sulfur cluster-binding oxidoreductase.	Carbon monoxide dehydrogenase, catalytic subunit.	0.905
Gbem_0313	cooS-2	Gbem_0313	Gbem_0072	Iron-sulfur cluster-binding oxidoreductase.	Carbon monoxide dehydrogenase, catalytic subunit.	0.905
Gbem_0313	hybL	Gbem_0313	Gbem_3136	Iron-sulfur cluster-binding oxidoreductase.	Periplasmically oriented, membrane-bound [NiFe]-hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.	0.922
Gbem_0313	hybS	Gbem_0313	Gbem_3139	Iron-sulfur cluster-binding oxidoreductase.	Periplasmically oriented, membrane-bound [NiFe]-hydrogenase, small subunit.	0.924
Gbem_0313	hycL	Gbem_0313	Gbem_1368	Iron-sulfur cluster-binding oxidoreductase.	Periplasmically oriented, membrane-bound [NiFe]-hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.	0.922
Gbem_0313	hycS	Gbem_0313	Gbem_1369	Iron-sulfur cluster-binding oxidoreductase.	Periplasmically oriented, membrane-bound [NiFe]-hydrogenase, small subunit.	0.924
cooF	Gbem_0313	Gbem_0071	Gbem_0313	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.	Iron-sulfur cluster-binding oxidoreductase.	0.933
cooF	cooS-1	Gbem_0071	Gbem_1736	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.	Carbon monoxide dehydrogenase, catalytic subunit.	0.915
cooF	cooS-2	Gbem_0071	Gbem_0072	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.	Carbon monoxide dehydrogenase, catalytic subunit.	0.980
cooF	hybL	Gbem_0071	Gbem_3136	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.	Periplasmically oriented, membrane-bound [NiFe]-hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.	0.900
cooF	hybS	Gbem_0071	Gbem_3139	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.	Periplasmically oriented, membrane-bound [NiFe]-hydrogenase, small subunit.	0.908
cooF	hycL	Gbem_0071	Gbem_1368	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.	Periplasmically oriented, membrane-bound [NiFe]-hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.	0.900
cooF	hycS	Gbem_0071	Gbem_1369	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.	Periplasmically oriented, membrane-bound [NiFe]-hydrogenase, small subunit.	0.908
cooS-1	Gbem_0313	Gbem_1736	Gbem_0313	Carbon monoxide dehydrogenase, catalytic subunit.	Iron-sulfur cluster-binding oxidoreductase.	0.905
cooS-1	cooF	Gbem_1736	Gbem_0071	Carbon monoxide dehydrogenase, catalytic subunit.	Carbon monoxide dehydrogenase-associated iron-sulfur cluster-binding oxidoreductase CooF.	0.915
cooS-1	cooS-2	Gbem_1736	Gbem_0072	Carbon monoxide dehydrogenase, catalytic subunit.	Carbon monoxide dehydrogenase, catalytic subunit.	0.916
cooS-1	hybL	Gbem_1736	Gbem_3136	Carbon monoxide dehydrogenase, catalytic subunit.	Periplasmically oriented, membrane-bound [NiFe]-hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.	0.900
cooS-1	hybS	Gbem_1736	Gbem_3139	Carbon monoxide dehydrogenase, catalytic subunit.	Periplasmically oriented, membrane-bound [NiFe]-hydrogenase, small subunit.	0.900
cooS-1	hycL	Gbem_1736	Gbem_1368	Carbon monoxide dehydrogenase, catalytic subunit.	Periplasmically oriented, membrane-bound [NiFe]-hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.	0.900