(30 nodes) Nitrogen metabolism network (Coccidioides immitis RMSCC2394)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CIRG_05834	Rhodocoxin reductase. (637 aa)
	CIRG_00047	Uncharacterized protein. (956 aa)
	CIRG_01032	NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (1076 aa)
	CIRG_00356	FluG; Belongs to the glutamine synthetase family. (864 aa)
	CIRG_02005	Beta-lactamase class C family protein. (542 aa)
	CIRG_01647	Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (271 aa)
	CIRG_05622	2-nitropropane dioxygenase. (347 aa)
	CIRG_04450	Zn(2)-C6 fungal-type domain-containing protein. (871 aa)
	CIRG_04509	Uncharacterized protein. (293 aa)
	CIRG_04715	DNA polymerase theta helicase domain. (937 aa)
	CIRG_05396	Formamidase. (413 aa)
	CIRG_05876	Enoyl-(Acyl-carrier-protein) reductase II. (355 aa)
	CIRG_05404	Carbonic anhydrase 2. (452 aa)
	CIRG_05529	2-nitropropane dioxygenase. (356 aa)
	CIRG_05699	Zn(2)-C6 fungal-type domain-containing protein. (840 aa)
	CIRG_06816	Zn(2)-C6 fungal-type domain-containing protein. (1127 aa)
	CIRG_08037	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (459 aa)
	CIRG_06500	Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (169 aa)
	CIRG_06760	AurR2. (744 aa)
	CIRG_08397	Glutamine synthetase. (357 aa)
	CIRG_08249	Dipeptidase; Belongs to the metallo-dependent hydrolases superfamily. Peptidase M19 family. (461 aa)
	CIRG_08630	Uncharacterized protein. (388 aa)
	CIRG_09308	Glutamate synthase. (2137 aa)
	CIRG_09493	Uncharacterized protein. (296 aa)
	CIRG_09598	Glutamine synthetase; Belongs to the glutamine synthetase family. (503 aa)
	CIRG_06408	Beta-lactamase domain-containing protein. (621 aa)
	CIRG_06603	ATPase family protein AAA domain-containing protein 1; Belongs to the AAA ATPase family. (418 aa)
	CIRG_08403	Dipeptidase; Belongs to the metallo-dependent hydrolases superfamily. Peptidase M19 family. (441 aa)
	cyn1	Cyanate hydratase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family. (161 aa)
	CIRG_09767	Nitrilase. (346 aa)

Your Current Organism:

Coccidioides immitis RMSCC2394

NCBI taxonomy Id: 404692
Other names: C. immitis RMSCC 2394, Coccidioides immitis RMSCC 2394

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CIRG_00047	CIRG_01647	A0A0J6XWX0	A0A0J6Y4F9	Uncharacterized protein.	Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.	0.762
CIRG_00356	CIRG_01032	A0A0J6XZK0	A0A0J6XXE5	FluG; Belongs to the glutamine synthetase family.	NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.827
CIRG_00356	CIRG_05396	A0A0J6XZK0	A0A0J6YDF6	FluG; Belongs to the glutamine synthetase family.	Formamidase.	0.799
CIRG_00356	CIRG_05834	A0A0J6XZK0	A0A0J6YGZ0	FluG; Belongs to the glutamine synthetase family.	Rhodocoxin reductase.	0.853
CIRG_00356	CIRG_08037	A0A0J6XZK0	A0A0J6YI45	FluG; Belongs to the glutamine synthetase family.	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.827
CIRG_00356	CIRG_08397	A0A0J6XZK0	A0A0J6YJ81	FluG; Belongs to the glutamine synthetase family.	Glutamine synthetase.	0.786
CIRG_00356	CIRG_09308	A0A0J6XZK0	A0A0J6YQM9	FluG; Belongs to the glutamine synthetase family.	Glutamate synthase.	0.883
CIRG_00356	CIRG_09767	A0A0J6XZK0	A0A0J7BH44	FluG; Belongs to the glutamine synthetase family.	Nitrilase.	0.808
CIRG_01032	CIRG_00356	A0A0J6XXE5	A0A0J6XZK0	NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	FluG; Belongs to the glutamine synthetase family.	0.827
CIRG_01032	CIRG_05396	A0A0J6XXE5	A0A0J6YDF6	NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Formamidase.	0.786
CIRG_01032	CIRG_05834	A0A0J6XXE5	A0A0J6YGZ0	NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Rhodocoxin reductase.	0.819
CIRG_01032	CIRG_08037	A0A0J6XXE5	A0A0J6YI45	NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.908
CIRG_01032	CIRG_08397	A0A0J6XXE5	A0A0J6YJ81	NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamine synthetase.	0.887
CIRG_01032	CIRG_09308	A0A0J6XXE5	A0A0J6YQM9	NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamate synthase.	0.979
CIRG_01032	CIRG_09598	A0A0J6XXE5	A0A0J6YR34	NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamine synthetase; Belongs to the glutamine synthetase family.	0.827
CIRG_01032	CIRG_09767	A0A0J6XXE5	A0A0J7BH44	NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Nitrilase.	0.858
CIRG_01647	CIRG_00047	A0A0J6Y4F9	A0A0J6XWX0	Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.	Uncharacterized protein.	0.762
CIRG_01647	CIRG_05404	A0A0J6Y4F9	A0A0J6YFJ7	Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.	Carbonic anhydrase 2.	0.762
CIRG_01647	CIRG_06500	A0A0J6Y4F9	A0A0J6YIQ6	Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.	Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.	0.874
CIRG_01647	cyn1	A0A0J6Y4F9	A0A0J7BFX1	Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.	Cyanate hydratase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.	0.840