(21 nodes) Mixed, incl. Polyamine biosynthetic process, and Hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines network (Oceanobacillus caeni)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

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protein homology

Your Input:
	KPH78214.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family. (267 aa)
	KPH77424.1	4-aminobutyrate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (435 aa)
	KPH75654.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (62 aa)
	KPH75655.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
	KPH75154.1	Saccharopine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)
	KPH75163.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
	KPH74969.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (191 aa)
	KPH74546.1	Carbon-nitrogen hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (522 aa)
	KPH74472.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa)
	KPH73965.1	Arginine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (490 aa)
	KPH73494.1	GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (159 aa)
	KPH72781.1	Agmatinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family. (290 aa)
	speE	Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine. (275 aa)
	KPH72632.1	Agmatinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family. (318 aa)
	KPH72633.1	Sodium:solute symporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (469 aa)
	KPH72255.1	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (182 aa)
	speH	S-adenosylmethionine decarboxylase; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 1 subfamily. (126 aa)
	KPH71759.1	Alanine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (186 aa)
	KPH71543.1	Lysine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (473 aa)
	KPH71546.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (71 aa)
	KPH71458.1	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)

Your Current Organism:

Oceanobacillus caeni

NCBI taxonomy Id: 405946
Other names: CCUG 53534, CIP 109363, KCTC 13061, O. caeni, Oceanobacillus caeni Nam et al. 2008, Oceanobacillus sp. MN1SW8a, Oceanobacillus sp. S-11, strain S-11

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KPH71458.1	KPH74472.1	AFL42_15110	AFL42_10125	Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.530
KPH71543.1	KPH71546.1	AFL42_14990	AFL42_15005	Lysine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.560
KPH71543.1	KPH72632.1	AFL42_14990	AFL42_13040	Lysine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Agmatinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.	0.520
KPH71543.1	KPH72781.1	AFL42_14990	AFL42_13005	Lysine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Agmatinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.	0.580
KPH71543.1	KPH73494.1	AFL42_14990	AFL42_12235	Lysine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.432
KPH71543.1	KPH74546.1	AFL42_14990	AFL42_10000	Lysine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon-nitrogen hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.811
KPH71543.1	KPH75154.1	AFL42_14990	AFL42_09105	Lysine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Saccharopine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.457
KPH71543.1	KPH75655.1	AFL42_14990	AFL42_08795	Lysine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
KPH71543.1	speE	AFL42_14990	AFL42_13010	Lysine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.	0.608
KPH71546.1	KPH71543.1	AFL42_15005	AFL42_14990	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.560
KPH71546.1	KPH73965.1	AFL42_15005	AFL42_11045	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.454
KPH71759.1	KPH74546.1	AFL42_14380	AFL42_10000	Alanine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon-nitrogen hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.642
KPH71759.1	KPH74969.1	AFL42_14380	AFL42_09230	Alanine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.652
KPH71759.1	KPH75154.1	AFL42_14380	AFL42_09105	Alanine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Saccharopine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455
KPH71759.1	speE	AFL42_14380	AFL42_13010	Alanine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.	0.408
KPH72255.1	KPH74546.1	AFL42_13700	AFL42_10000	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon-nitrogen hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.642
KPH72255.1	KPH74969.1	AFL42_13700	AFL42_09230	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.605
KPH72255.1	speE	AFL42_13700	AFL42_13010	GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.	0.408
KPH72632.1	KPH71543.1	AFL42_13040	AFL42_14990	Agmatinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.	Lysine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
KPH72632.1	KPH72633.1	AFL42_13040	AFL42_13045	Agmatinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.	Sodium:solute symporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.581

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