(7 nodes) Mixed, incl. Von Willebrand factor (vWF) type A domain, and Oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen network (Oceanobacillus caeni)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KPH79193.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa)
	KPH79215.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (61 aa)
	KPH78686.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (69 aa)
	KPH77117.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (62 aa)
	KPH73798.1	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (106 aa)
	KPH71135.1	Von Willebrand factor A; Derived by automated computational analysis using gene prediction method: Protein Homology. (636 aa)
	KPH71136.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)

Your Current Organism:

Oceanobacillus caeni

NCBI taxonomy Id: 405946
Other names: CCUG 53534, CIP 109363, KCTC 13061, O. caeni, Oceanobacillus caeni Nam et al. 2008, Oceanobacillus sp. MN1SW8a, Oceanobacillus sp. S-11, strain S-11

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KPH71135.1	KPH71136.1	AFL42_16285	AFL42_16290	Von Willebrand factor A; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
KPH71135.1	KPH73798.1	AFL42_16285	AFL42_11685	Von Willebrand factor A; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
KPH71135.1	KPH77117.1	AFL42_16285	AFL42_04350	Von Willebrand factor A; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.691
KPH71135.1	KPH78686.1	AFL42_16285	AFL42_00820	Von Willebrand factor A; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.495
KPH71135.1	KPH79193.1	AFL42_16285	AFL42_00315	Von Willebrand factor A; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.553
KPH71135.1	KPH79215.1	AFL42_16285	AFL42_00445	Von Willebrand factor A; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.700
KPH71136.1	KPH71135.1	AFL42_16290	AFL42_16285	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Von Willebrand factor A; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
KPH71136.1	KPH77117.1	AFL42_16290	AFL42_04350	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.547
KPH71136.1	KPH78686.1	AFL42_16290	AFL42_00820	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.435
KPH71136.1	KPH79193.1	AFL42_16290	AFL42_00315	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.459
KPH71136.1	KPH79215.1	AFL42_16290	AFL42_00445	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.605
KPH73798.1	KPH71135.1	AFL42_11685	AFL42_16285	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Von Willebrand factor A; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
KPH73798.1	KPH77117.1	AFL42_11685	AFL42_04350	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
KPH73798.1	KPH78686.1	AFL42_11685	AFL42_00820	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.693
KPH73798.1	KPH79193.1	AFL42_11685	AFL42_00315	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.666
KPH73798.1	KPH79215.1	AFL42_11685	AFL42_00445	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.749
KPH77117.1	KPH71135.1	AFL42_04350	AFL42_16285	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Von Willebrand factor A; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.691
KPH77117.1	KPH71136.1	AFL42_04350	AFL42_16290	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.547
KPH77117.1	KPH73798.1	AFL42_04350	AFL42_11685	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
KPH77117.1	KPH78686.1	AFL42_04350	AFL42_00820	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.549

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