STRINGSTRING
atpG atpG atpD atpD atpC atpC KPH76472.1 KPH76472.1 KPH76457.1 KPH76457.1 KPH76456.1 KPH76456.1 rbfA rbfA KPH77156.1 KPH77156.1 ppaC ppaC KPH78233.1 KPH78233.1 KPH78232.1 KPH78232.1 KPH78693.1 KPH78693.1 KPH71448.1 KPH71448.1 KPH73963.1 KPH73963.1 KPH73962.1 KPH73962.1 KPH73961.1 KPH73961.1 ctaB ctaB KPH74469.1 KPH74469.1 KPH73964.1 KPH73964.1 KPH74468.1 KPH74468.1 sdhB sdhB sdhA sdhA ctaB-2 ctaB-2 KPH73450.1 KPH73450.1 ctaB-3 ctaB-3 KPH72454.1 KPH72454.1 ppaX ppaX KPH71720.1 KPH71720.1 KPH71721.1 KPH71721.1 KPH75828.1 KPH75828.1 KPH75827.1 KPH75827.1 KPH75826.1 KPH75826.1 KPH75825.1 KPH75825.1 KPH76022.1 KPH76022.1 KPH76021.1 KPH76021.1 KPH76020.1 KPH76020.1 KPH76002.1 KPH76002.1 KPH76001.1 KPH76001.1 atpB atpB atpE atpE atpF atpF atpA atpA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
atpGATP synthase F0F1 subunit gamma; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. (285 aa)
atpDATP F0F1 synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. (469 aa)
atpCATP synthase F0F1 subunit epsilon; Produces ATP from ADP in the presence of a proton gradient across the membrane. (132 aa)
KPH76472.1NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (353 aa)
KPH76457.1Subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology. (493 aa)
KPH76456.1Subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; Derived by automated computational analysis using gene prediction method: Protein Homology. (113 aa)
rbfARibosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. (113 aa)
KPH77156.1ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (887 aa)
ppaCInorganic pyrophosphatase; Catalyzes the hydrolysis of pyrophosphate to phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
KPH78233.1Cytochrome D ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology. (403 aa)
KPH78232.1Cytochrome D ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
KPH78693.1NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (406 aa)
KPH71448.1(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (519 aa)
KPH73963.1Cytochrome B oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (205 aa)
KPH73962.1Quinol oxidase subunit 1; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (618 aa)
KPH73961.1Cytochrome B; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). (353 aa)
ctaBProtoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group; Belongs to the UbiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily. (313 aa)
KPH74469.1Cytochrome C oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa)
KPH73964.1Cytochrome B6; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa)
KPH74468.1Derived by automated computational analysis using gene prediction method: Protein Homology. (559 aa)
sdhBPart of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)
sdhAPart of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; Derived by automated computational analysis using gene prediction method: Protein Homology. (583 aa)
ctaB-2Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group; Belongs to the UbiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily. (300 aa)
KPH73450.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (134 aa)
ctaB-3Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group; Belongs to the UbiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily. (309 aa)
KPH72454.1NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (402 aa)
ppaXPyrophosphatase; Hydrolyzes pyrophosphate formed during P-Ser-HPr dephosphorylation by HPrK/P. Might play a role in controlling the intracellular pyrophosphate pool. (212 aa)
KPH71720.1Zinc protease; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
KPH71721.1Zinc protease; Derived by automated computational analysis using gene prediction method: Protein Homology. (428 aa)
KPH75828.1Quinol oxidase subunit 2; Catalyzes quinol oxidation with the concomitant reduction of oxygen to water. Subunit II transfers the electrons from a quinol to the binuclear center of the catalytic subunit I. (313 aa)
KPH75827.1Quinol oxidase subunit 1; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family. (649 aa)
KPH75826.1Cytochrome o ubiquinol oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology. (198 aa)
KPH75825.1Cytochrome aa3 quinol oxidase subunit IV; Derived by automated computational analysis using gene prediction method: Protein Homology. (94 aa)
KPH76022.1Menaquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)
KPH76021.1Cytochrome b6; Electron transport protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
KPH76020.1Cytochrome Cbb3; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
KPH76002.1Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family. (563 aa)
KPH76001.1Cytochrome B5; Derived by automated computational analysis using gene prediction method: Protein Homology. (167 aa)
atpBATP synthase subunit A; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family. (240 aa)
atpEATP synthase F0F1 subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. (68 aa)
atpFATP synthase F0F1 subunit B; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. (174 aa)
atpAATP F0F1 synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. (502 aa)
Your Current Organism:
Oceanobacillus caeni
NCBI taxonomy Id: 405946
Other names: CCUG 53534, CIP 109363, KCTC 13061, O. caeni, Oceanobacillus caeni Nam et al. 2008, Oceanobacillus sp. MN1SW8a, Oceanobacillus sp. S-11, strain S-11
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