9 items (Natrinema sp. J72) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NJ7G_0783	Hypothetical protein. (507 aa)
	NJ7G_0784	Propanoyl-CoA C-acyltransferase. (392 aa)
	NJ7G_1135	Hydroxymethylglutaryl-CoA synthase. (445 aa)
	NJ7G_2315	Propanoyl-CoA C-acyltransferase. (436 aa)
	NJ7G_2316	Hypothetical protein. (475 aa)
	NJ7G_3002	Hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (288 aa)
	NJ7G_3393	propanoyl-CoA C-acyltransferase. (376 aa)
	NJ7G_3395	Propanoyl-CoA C-acyltransferase. (385 aa)
	NJ7G_3667	Propanoyl-CoA C-acyltransferase. (388 aa)

Your Current Organism:

Natrinema sp. J72

NCBI taxonomy Id: 406552
Other names: N. sp. J7-2, Natrinema sp. J7-2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
NJ7G_0783	NJ7G_0784	Hypothetical protein.	Propanoyl-CoA C-acyltransferase.	0.999
NJ7G_0783	NJ7G_1135	Hypothetical protein.	Hydroxymethylglutaryl-CoA synthase.	0.981
NJ7G_0783	NJ7G_2315	Hypothetical protein.	Propanoyl-CoA C-acyltransferase.	0.999
NJ7G_0783	NJ7G_2316	Hypothetical protein.	Hypothetical protein.	0.999
NJ7G_0783	NJ7G_3393	Hypothetical protein.	propanoyl-CoA C-acyltransferase.	0.999
NJ7G_0783	NJ7G_3395	Hypothetical protein.	Propanoyl-CoA C-acyltransferase.	0.999
NJ7G_0783	NJ7G_3667	Hypothetical protein.	Propanoyl-CoA C-acyltransferase.	0.999
NJ7G_0784	NJ7G_0783	Propanoyl-CoA C-acyltransferase.	Hypothetical protein.	0.999
NJ7G_0784	NJ7G_1135	Propanoyl-CoA C-acyltransferase.	Hydroxymethylglutaryl-CoA synthase.	0.978
NJ7G_0784	NJ7G_2315	Propanoyl-CoA C-acyltransferase.	Propanoyl-CoA C-acyltransferase.	0.602
NJ7G_0784	NJ7G_2316	Propanoyl-CoA C-acyltransferase.	Hypothetical protein.	0.999
NJ7G_0784	NJ7G_3393	Propanoyl-CoA C-acyltransferase.	propanoyl-CoA C-acyltransferase.	0.639
NJ7G_0784	NJ7G_3395	Propanoyl-CoA C-acyltransferase.	Propanoyl-CoA C-acyltransferase.	0.639
NJ7G_0784	NJ7G_3667	Propanoyl-CoA C-acyltransferase.	Propanoyl-CoA C-acyltransferase.	0.631
NJ7G_1135	NJ7G_0783	Hydroxymethylglutaryl-CoA synthase.	Hypothetical protein.	0.981
NJ7G_1135	NJ7G_0784	Hydroxymethylglutaryl-CoA synthase.	Propanoyl-CoA C-acyltransferase.	0.978
NJ7G_1135	NJ7G_2315	Hydroxymethylglutaryl-CoA synthase.	Propanoyl-CoA C-acyltransferase.	0.978
NJ7G_1135	NJ7G_2316	Hydroxymethylglutaryl-CoA synthase.	Hypothetical protein.	0.981
NJ7G_1135	NJ7G_3393	Hydroxymethylglutaryl-CoA synthase.	propanoyl-CoA C-acyltransferase.	0.978
NJ7G_1135	NJ7G_3395	Hydroxymethylglutaryl-CoA synthase.	Propanoyl-CoA C-acyltransferase.	0.978